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ADAPTSITE: detecting natural selection at single amino acid sites.
Suzuki Y, Gojobori T, Nei M. Suzuki Y, et al. Bioinformatics. 2001 Jul;17(7):660-1. doi: 10.1093/bioinformatics/17.7.660. Bioinformatics. 2001. PMID: 11448887
The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data.
Katsura Y, Stanley CE Jr, Kumar S, Nei M. Katsura Y, et al. Mol Biol Evol. 2017 Mar 1;34(3):718-723. doi: 10.1093/molbev/msw272. Mol Biol Evol. 2017. PMID: 28100791 Free PMC article.
Efficiencies of the NJp, Maximum Likelihood, and Bayesian Methods of Phylogenetic Construction for Compositional and Noncompositional Genes.
Yoshida R, Nei M. Yoshida R, et al. Mol Biol Evol. 2016 Jun;33(6):1618-24. doi: 10.1093/molbev/msw042. Epub 2016 Feb 28. Mol Biol Evol. 2016. PMID: 26929244
This c is given by Pc (1 - dT/dTmax) = Pc (m - 3 - dT/2)/(m - 3), where m is the number of taxa used and dTmax is the maximum possible value of dT, which is given by 2(m - 3). ...
This c is given by Pc (1 - dT/dTmax) = Pc (m - 3 - dT/2)/(m - 3), where m is the number of taxa used and dTmax is the m …
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.
Tamura K, Dudley J, Nei M, Kumar S. Tamura K, et al. Mol Biol Evol. 2007 Aug;24(8):1596-9. doi: 10.1093/molbev/msm092. Epub 2007 May 7. Mol Biol Evol. 2007. PMID: 17488738
Evolutionary change of the numbers of homeobox genes in bilateral animals.
Nam J, Nei M. Nam J, et al. Mol Biol Evol. 2005 Dec;22(12):2386-94. doi: 10.1093/molbev/msi229. Epub 2005 Aug 3. Mol Biol Evol. 2005. PMID: 16079247 Free PMC article.
Evolutionary dynamics of olfactory receptor genes in Drosophila species.
Nozawa M, Nei M. Nozawa M, et al. Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):7122-7. doi: 10.1073/pnas.0702133104. Epub 2007 Apr 16. Proc Natl Acad Sci U S A. 2007. PMID: 17438280 Free PMC article.
Bottlenecks, genetic polymorphism and speciation.
Nei M. Nei M. Genetics. 2005 May;170(1):1-4. Genetics. 2005. PMID: 15914771 Free PMC article. No abstract available.
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