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MEGA2: molecular evolutionary genetics analysis software.
Kumar S, Tamura K, Jakobsen IB, Nei M. Kumar S, et al. Among authors: nei m. Bioinformatics. 2001 Dec;17(12):1244-5. doi: 10.1093/bioinformatics/17.12.1244. Bioinformatics. 2001. PMID: 11751241
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. Tamura K, et al. Among authors: nei m. Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4. Mol Biol Evol. 2011. PMID: 21546353 Free PMC article.
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.
Tamura K, Dudley J, Nei M, Kumar S. Tamura K, et al. Among authors: nei m. Mol Biol Evol. 2007 Aug;24(8):1596-9. doi: 10.1093/molbev/msm092. Epub 2007 May 7. Mol Biol Evol. 2007. PMID: 17488738
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences.
Kumar S, Nei M, Dudley J, Tamura K. Kumar S, et al. Among authors: nei m. Brief Bioinform. 2008 Jul;9(4):299-306. doi: 10.1093/bib/bbn017. Epub 2008 Apr 16. Brief Bioinform. 2008. PMID: 18417537 Free PMC article.
Bottlenecks, genetic polymorphism and speciation.
Nei M. Nei M. Genetics. 2005 May;170(1):1-4. Genetics. 2005. PMID: 15914771 Free PMC article. No abstract available.
A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes.
Nam J, Kaufmann K, Theissen G, Nei M. Nam J, et al. Among authors: nei m. Nucleic Acids Res. 2005 Jan 19;33(2):e12. doi: 10.1093/nar/gni003. Nucleic Acids Res. 2005. PMID: 15659573 Free PMC article.
The neutral theory of molecular evolution in the genomic era.
Nei M, Suzuki Y, Nozawa M. Nei M, et al. Annu Rev Genomics Hum Genet. 2010;11:265-89. doi: 10.1146/annurev-genom-082908-150129. Annu Rev Genomics Hum Genet. 2010. PMID: 20565254 Review.
Genomic organization and evolutionary analysis of Ly49 genes encoding the rodent natural killer cell receptors: rapid evolution by repeated gene duplication.
Hao L, Nei M. Hao L, et al. Among authors: nei m. Immunogenetics. 2004 Aug;56(5):343-54. doi: 10.1007/s00251-004-0703-0. Epub 2004 Aug 14. Immunogenetics. 2004. PMID: 15316687
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