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MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. Tamura K, et al. Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4. Mol Biol Evol. 2011. PMID: 21546353 Free PMC article.
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.
Tamura K, Dudley J, Nei M, Kumar S. Tamura K, et al. Mol Biol Evol. 2007 Aug;24(8):1596-9. doi: 10.1093/molbev/msm092. Epub 2007 May 7. Mol Biol Evol. 2007. PMID: 17488738
Prospects for inferring very large phylogenies by using the neighbor-joining method.
Tamura K, Nei M, Kumar S. Tamura K, et al. Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):11030-5. doi: 10.1073/pnas.0404206101. Epub 2004 Jul 16. Proc Natl Acad Sci U S A. 2004. PMID: 15258291 Free PMC article.
Phylogenetic analysis in molecular evolutionary genetics.
Nei M. Nei M. Annu Rev Genet. 1996;30:371-403. doi: 10.1146/annurev.genet.30.1.371. Annu Rev Genet. 1996. PMID: 8982459 Review.
MEGA2: molecular evolutionary genetics analysis software.
Kumar S, Tamura K, Jakobsen IB, Nei M. Kumar S, et al. Bioinformatics. 2001 Dec;17(12):1244-5. doi: 10.1093/bioinformatics/17.12.1244. Bioinformatics. 2001. PMID: 11751241
MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers.
Kumar S, Tamura K, Nei M. Kumar S, et al. Comput Appl Biosci. 1994 Apr;10(2):189-91. doi: 10.1093/bioinformatics/10.2.189. Comput Appl Biosci. 1994. PMID: 8019868
ADAPTSITE: detecting natural selection at single amino acid sites.
Suzuki Y, Gojobori T, Nei M. Suzuki Y, et al. Bioinformatics. 2001 Jul;17(7):660-1. doi: 10.1093/bioinformatics/17.7.660. Bioinformatics. 2001. PMID: 11448887
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