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DNA recognition by Cys2His2 zinc finger proteins.
Annu Rev Biophys Biomol Struct. 2000;29:183-212. doi: 10.1146/annurev.biophys.29.1.183.
Annu Rev Biophys Biomol Struct. 2000.
PMID: 10940247
Review.
Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes.
Nekludova L, Pabo CO.
Nekludova L, et al.
Proc Natl Acad Sci U S A. 1994 Jul 19;91(15):6948-52. doi: 10.1073/pnas.91.15.6948.
Proc Natl Acad Sci U S A. 1994.
PMID: 8041727
Free PMC article.
Item in Clipboard
Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions.
Elrod-Erickson M, Rould MA, Nekludova L, Pabo CO.
Elrod-Erickson M, et al. Among authors: nekludova l.
Structure. 1996 Oct 15;4(10):1171-80. doi: 10.1016/s0969-2126(96)00125-6.
Structure. 1996.
PMID: 8939742
Free article.
Item in Clipboard
Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?
Pabo CO, Nekludova L.
Pabo CO, et al. Among authors: nekludova l.
J Mol Biol. 2000 Aug 18;301(3):597-624. doi: 10.1006/jmbi.2000.3918.
J Mol Biol. 2000.
PMID: 10966773
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A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.
Macisaac KD, Gordon DB, Nekludova L, Odom DT, Schreiber J, Gifford DK, Young RA, Fraenkel E.
Macisaac KD, et al. Among authors: nekludova l.
Bioinformatics. 2006 Feb 15;22(4):423-9. doi: 10.1093/bioinformatics/bti815. Epub 2005 Dec 6.
Bioinformatics. 2006.
PMID: 16332710
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TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs.
Gordon DB, Nekludova L, McCallum S, Fraenkel E.
Gordon DB, et al. Among authors: nekludova l.
Bioinformatics. 2005 Jul 15;21(14):3164-5. doi: 10.1093/bioinformatics/bti481. Epub 2005 May 19.
Bioinformatics. 2005.
PMID: 15905282
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Core transcriptional regulatory circuitry in human hepatocytes.
Odom DT, Dowell RD, Jacobsen ES, Nekludova L, Rolfe PA, Danford TW, Gifford DK, Fraenkel E, Bell GI, Young RA.
Odom DT, et al. Among authors: nekludova l.
Mol Syst Biol. 2006;2:2006.0017. doi: 10.1038/msb4100059. Epub 2006 May 2.
Mol Syst Biol. 2006.
PMID: 16738562
Free PMC article.
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