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Alternate pathways for folding in the flavodoxin fold family revealed by a nucleation-growth model.
Nelson ED, Grishin NV. Nelson ED, et al. J Mol Biol. 2006 May 5;358(3):646-53. doi: 10.1016/j.jmb.2006.02.026. Epub 2006 Mar 3. J Mol Biol. 2006. PMID: 16563435
Long-Range Epistasis Mediated by Structural Change in a Model of Ligand Binding Proteins.
Nelson ED, Grishin NV. Nelson ED, et al. PLoS One. 2016 Nov 21;11(11):e0166739. doi: 10.1371/journal.pone.0166739. eCollection 2016. PLoS One. 2016. PMID: 27870911 Free PMC article.
Evolution of off-lattice model proteins under ligand binding constraints.
Nelson ED, Grishin NV. Nelson ED, et al. Phys Rev E. 2016 Aug;94(2-1):022410. doi: 10.1103/PhysRevE.94.022410. Epub 2016 Aug 15. Phys Rev E. 2016. PMID: 27627338
Anomalous diffusion in neutral evolution of model proteins.
Nelson ED, Grishin NV. Nelson ED, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):060701. doi: 10.1103/PhysRevE.91.060701. Epub 2015 Jun 1. Phys Rev E Stat Nonlin Soft Matter Phys. 2015. PMID: 26172648
Structural evolution of proteinlike heteropolymers.
Nelson ED, Grishin NV. Nelson ED, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec;90(6):062715. doi: 10.1103/PhysRevE.90.062715. Epub 2014 Dec 23. Phys Rev E Stat Nonlin Soft Matter Phys. 2014. PMID: 25615137
Folding domain B of protein A on a dynamically partitioned free energy landscape.
Nelson ED, Grishin NV. Nelson ED, et al. Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1489-93. doi: 10.1073/pnas.0705707105. Epub 2008 Jan 29. Proc Natl Acad Sci U S A. 2008. PMID: 18230738 Free PMC article.
Efficient expansion, folding, and unfolding of proteins.
Nelson ED, Grishin NV. Nelson ED, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Nov;70(5 Pt 1):051906. doi: 10.1103/PhysRevE.70.051906. Epub 2004 Nov 15. Phys Rev E Stat Nonlin Soft Matter Phys. 2004. PMID: 15600655
Scaling approach to the folding kinetics of large proteins.
Nelson ED, Grishin NV. Nelson ED, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jan;73(1 Pt 1):011904. doi: 10.1103/PhysRevE.73.011904. Epub 2006 Jan 10. Phys Rev E Stat Nonlin Soft Matter Phys. 2006. PMID: 16486182
Inference of epistatic effects in a key mitochondrial protein.
Nelson ED, Grishin NV. Nelson ED, et al. Phys Rev E. 2018 Jun;97(6-1):062404. doi: 10.1103/PhysRevE.97.062404. Phys Rev E. 2018. PMID: 30011480
How Often Do Protein Genes Navigate Valleys of Low Fitness?
Nelson ED, Grishin NV. Nelson ED, et al. Genes (Basel). 2019 Apr 8;10(4):283. doi: 10.3390/genes10040283. Genes (Basel). 2019. PMID: 30965625 Free PMC article.
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