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152 results
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False discovery rates and related statistical concepts in mass spectrometry-based proteomics.
Choi H, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):47-50. doi: 10.1021/pr700747q. Epub 2007 Dec 8. J Proteome Res. 2008. PMID: 18067251
Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors.
Djomehri SI, Gonzalez ME, da Veiga Leprevost F, Tekula SR, Chang HY, White MJ, Cimino-Mathews A, Burman B, Basrur V, Argani P, Nesvizhskii AI, Kleer CG. Djomehri SI, et al. Among authors: nesvizhskii ai. Nat Commun. 2020 Apr 7;11(1):1723. doi: 10.1038/s41467-020-15283-z. Nat Commun. 2020. PMID: 32265444 Free PMC article.
Experimental protein mixture for validating tandem mass spectral analysis.
Keller A, Purvine S, Nesvizhskii AI, Stolyar S, Goodlett DR, Kolker E. Keller A, et al. Among authors: nesvizhskii ai. OMICS. 2002;6(2):207-12. doi: 10.1089/153623102760092805. OMICS. 2002. PMID: 12143966
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.
Keller A, Nesvizhskii AI, Kolker E, Aebersold R. Keller A, et al. Among authors: nesvizhskii ai. Anal Chem. 2002 Oct 15;74(20):5383-92. doi: 10.1021/ac025747h. Anal Chem. 2002. PMID: 12403597
The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts.
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. von Haller PD, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2003 Jul;2(7):426-7. doi: 10.1074/mcp.D300002-MCP200. Epub 2003 Jun 25. Mol Cell Proteomics. 2003. PMID: 12832456
The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. von Haller PD, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2003 Jul;2(7):428-42. doi: 10.1074/mcp.M300041-MCP200. Epub 2003 Jun 25. Mol Cell Proteomics. 2003. PMID: 12832459
A statistical model for identifying proteins by tandem mass spectrometry.
Nesvizhskii AI, Keller A, Kolker E, Aebersold R. Nesvizhskii AI, et al. Anal Chem. 2003 Sep 1;75(17):4646-58. doi: 10.1021/ac0341261. Anal Chem. 2003. PMID: 14632076
Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS.
Nesvizhskii AI, Aebersold R. Nesvizhskii AI, et al. Drug Discov Today. 2004 Feb 15;9(4):173-81. doi: 10.1016/S1359-6446(03)02978-7. Drug Discov Today. 2004. PMID: 14960397 Review.
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R. Desiere F, et al. Among authors: nesvizhskii ai. Genome Biol. 2005;6(1):R9. doi: 10.1186/gb-2004-6-1-r9. Epub 2004 Dec 10. Genome Biol. 2005. PMID: 15642101 Free PMC article.
Interpretation of shotgun proteomic data: the protein inference problem.
Nesvizhskii AI, Aebersold R. Nesvizhskii AI, et al. Mol Cell Proteomics. 2005 Oct;4(10):1419-40. doi: 10.1074/mcp.R500012-MCP200. Epub 2005 Jul 11. Mol Cell Proteomics. 2005. PMID: 16009968
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