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The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts.
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. von Haller PD, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2003 Jul;2(7):426-7. doi: 10.1074/mcp.D300002-MCP200. Epub 2003 Jun 25. Mol Cell Proteomics. 2003. PMID: 12832456
The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. von Haller PD, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2003 Jul;2(7):428-42. doi: 10.1074/mcp.M300041-MCP200. Epub 2003 Jun 25. Mol Cell Proteomics. 2003. PMID: 12832459
The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data.
Carr S, Aebersold R, Baldwin M, Burlingame A, Clauser K, Nesvizhskii A; Working Group on Publication Guidelines for Peptide and Protein Identification Data. Carr S, et al. Mol Cell Proteomics. 2004 Jun;3(6):531-3. doi: 10.1074/mcp.T400006-MCP200. Epub 2004 Apr 9. Mol Cell Proteomics. 2004. PMID: 15075378 No abstract available.
Human Plasma PeptideAtlas.
Deutsch EW, Eng JK, Zhang H, King NL, Nesvizhskii AI, Lin B, Lee H, Yi EC, Ossola R, Aebersold R. Deutsch EW, et al. Among authors: nesvizhskii ai. Proteomics. 2005 Aug;5(13):3497-500. doi: 10.1002/pmic.200500160. Proteomics. 2005. PMID: 16052627
Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides.
Nesvizhskii AI, Roos FF, Grossmann J, Vogelzang M, Eddes JS, Gruissem W, Baginsky S, Aebersold R. Nesvizhskii AI, et al. Mol Cell Proteomics. 2006 Apr;5(4):652-70. doi: 10.1074/mcp.M500319-MCP200. Epub 2005 Dec 12. Mol Cell Proteomics. 2006. PMID: 16352522
183 results