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2,737 results
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ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites.
Emanuelsson O, Nielsen H, von Heijne G. Emanuelsson O, et al. Among authors: nielsen h. Protein Sci. 1999 May;8(5):978-84. doi: 10.1110/ps.8.5.978. Protein Sci. 1999. PMID: 10338008 Free PMC article.
Defining a similarity threshold for a functional protein sequence pattern: the signal peptide cleavage site.
Nielsen H, Engelbrecht J, von Heijne G, Brunak S. Nielsen H, et al. Proteins. 1996 Feb;24(2):165-77. doi: 10.1002/(SICI)1097-0134(199602)24:2<165::AID-PROT4>3.0.CO;2-I. Proteins. 1996. PMID: 8820484
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G. Nielsen H, et al. Protein Eng. 1997 Jan;10(1):1-6. doi: 10.1093/protein/10.1.1. Protein Eng. 1997. PMID: 9051728
Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis.
Pedersen AG, Nielsen H. Pedersen AG, et al. Among authors: nielsen h. Proc Int Conf Intell Syst Mol Biol. 1997;5:226-33. Proc Int Conf Intell Syst Mol Biol. 1997. PMID: 9322041
Machine learning approaches for the prediction of signal peptides and other protein sorting signals.
Nielsen H, Brunak S, von Heijne G. Nielsen H, et al. Protein Eng. 1999 Jan;12(1):3-9. doi: 10.1093/protein/12.1.3. Protein Eng. 1999. PMID: 10065704 Review.
A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G. Nielsen H, et al. Int J Neural Syst. 1997 Oct-Dec;8(5-6):581-99. doi: 10.1142/s0129065797000537. Int J Neural Syst. 1997. PMID: 10065837
Prediction of lipoprotein signal peptides in Gram-negative bacteria.
Juncker AS, Willenbrock H, Von Heijne G, Brunak S, Nielsen H, Krogh A. Juncker AS, et al. Among authors: nielsen h. Protein Sci. 2003 Aug;12(8):1652-62. doi: 10.1110/ps.0303703. Protein Sci. 2003. PMID: 12876315 Free PMC article.
Improved prediction of signal peptides: SignalP 3.0.
Bendtsen JD, Nielsen H, von Heijne G, Brunak S. Bendtsen JD, et al. Among authors: nielsen h. J Mol Biol. 2004 Jul 16;340(4):783-95. doi: 10.1016/j.jmb.2004.05.028. J Mol Biol. 2004. PMID: 15223320
Locating proteins in the cell using TargetP, SignalP and related tools.
Emanuelsson O, Brunak S, von Heijne G, Nielsen H. Emanuelsson O, et al. Among authors: nielsen h. Nat Protoc. 2007;2(4):953-71. doi: 10.1038/nprot.2007.131. Nat Protoc. 2007. PMID: 17446895
SignalP 5.0 improves signal peptide predictions using deep neural networks.
Almagro Armenteros JJ, Tsirigos KD, S√łnderby CK, Petersen TN, Winther O, Brunak S, von Heijne G, Nielsen H. Almagro Armenteros JJ, et al. Among authors: nielsen h. Nat Biotechnol. 2019 Apr;37(4):420-423. doi: 10.1038/s41587-019-0036-z. Epub 2019 Feb 18. Nat Biotechnol. 2019. PMID: 30778233
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