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Predicting Secretory Proteins with SignalP.
Nielsen H. Nielsen H. Methods Mol Biol. 2017;1611:59-73. doi: 10.1007/978-1-4939-7015-5_6. Methods Mol Biol. 2017. PMID: 28451972
Identification, molecular cloning, expression and chromosome mapping of a family of transformation upregulated hnRNP-K proteins derived by alternative splicing.
Dejgaard K, Leffers H, Rasmussen HH, Madsen P, Kruse TA, Gesser B, Nielsen H, Celis JE. Dejgaard K, et al. Among authors: nielsen h. J Mol Biol. 1994 Feb 11;236(1):33-48. doi: 10.1006/jmbi.1994.1116. J Mol Biol. 1994. PMID: 8107114
Defining a similarity threshold for a functional protein sequence pattern: the signal peptide cleavage site.
Nielsen H, Engelbrecht J, von Heijne G, Brunak S. Nielsen H, et al. Proteins. 1996 Feb;24(2):165-77. doi: 10.1002/(SICI)1097-0134(199602)24:2<165::AID-PROT4>3.0.CO;2-I. Proteins. 1996. PMID: 8820484
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G. Nielsen H, et al. Protein Eng. 1997 Jan;10(1):1-6. doi: 10.1093/protein/10.1.1. Protein Eng. 1997. PMID: 9051728
Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis.
Pedersen AG, Nielsen H. Pedersen AG, et al. Among authors: nielsen h. Proc Int Conf Intell Syst Mol Biol. 1997;5:226-33. Proc Int Conf Intell Syst Mol Biol. 1997. PMID: 9322041
Prediction of signal peptides and signal anchors by a hidden Markov model.
Nielsen H, Krogh A. Nielsen H, et al. Proc Int Conf Intell Syst Mol Biol. 1998;6:122-30. Proc Int Conf Intell Syst Mol Biol. 1998. PMID: 9783217
Machine learning approaches for the prediction of signal peptides and other protein sorting signals.
Nielsen H, Brunak S, von Heijne G. Nielsen H, et al. Protein Eng. 1999 Jan;12(1):3-9. doi: 10.1093/protein/12.1.3. Protein Eng. 1999. PMID: 10065704 Review.
A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G. Nielsen H, et al. Int J Neural Syst. 1997 Oct-Dec;8(5-6):581-99. doi: 10.1142/s0129065797000537. Int J Neural Syst. 1997. PMID: 10065837
Prediction of human protein function from post-translational modifications and localization features.
Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Staerfeldt HH, Rapacki K, Workman C, Andersen CA, Knudsen S, Krogh A, Valencia A, Brunak S. Jensen LJ, et al. Among authors: nielsen h. J Mol Biol. 2002 Jun 21;319(5):1257-65. doi: 10.1016/S0022-2836(02)00379-0. J Mol Biol. 2002. PMID: 12079362
Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays.
Nielsen HB, Wernersson R, Knudsen S. Nielsen HB, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3491-6. doi: 10.1093/nar/gkg622. Nucleic Acids Res. 2003. PMID: 12824351 Free PMC article.
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