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Prediction of human protein function from post-translational modifications and localization features.
Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Staerfeldt HH, Rapacki K, Workman C, Andersen CA, Knudsen S, Krogh A, Valencia A, Brunak S. Jensen LJ, et al. J Mol Biol. 2002 Jun 21;319(5):1257-65. doi: 10.1016/S0022-2836(02)00379-0. J Mol Biol. 2002. PMID: 12079362
Prediction of lipoprotein signal peptides in Gram-negative bacteria.
Juncker AS, Willenbrock H, Von Heijne G, Brunak S, Nielsen H, Krogh A. Juncker AS, et al. Protein Sci. 2003 Aug;12(8):1652-62. doi: 10.1110/ps.0303703. Protein Sci. 2003. PMID: 12876315 Free PMC article.
Improved prediction of signal peptides: SignalP 3.0.
Bendtsen JD, Nielsen H, von Heijne G, Brunak S. Bendtsen JD, et al. J Mol Biol. 2004 Jul 16;340(4):783-95. doi: 10.1016/j.jmb.2004.05.028. J Mol Biol. 2004. PMID: 15223320
Implementation of a gene expression index calculation method based on the PDNN model.
Nielsen HB, Gautier L, Knudsen S. Nielsen HB, et al. Bioinformatics. 2005 Mar 1;21(5):687-8. doi: 10.1093/bioinformatics/bti078. Epub 2004 Oct 27. Bioinformatics. 2005. PMID: 15509605
Prediction of twin-arginine signal peptides.
Bendtsen JD, Nielsen H, Widdick D, Palmer T, Brunak S. Bendtsen JD, et al. BMC Bioinformatics. 2005 Jul 2;6:167. doi: 10.1186/1471-2105-6-167. BMC Bioinformatics. 2005. PMID: 15992409 Free PMC article.
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