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3,627 results
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Gapped sequence alignment using artificial neural networks: application to the MHC class I system.
Andreatta M, Nielsen M. Andreatta M, et al. Among authors: nielsen m. Bioinformatics. 2016 Feb 15;32(4):511-7. doi: 10.1093/bioinformatics/btv639. Epub 2015 Oct 29. Bioinformatics. 2016. PMID: 26515819 Free PMC article.
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations.
Nielsen M, Lundegaard C, Worning P, Lauemøller SL, Lamberth K, Buus S, Brunak S, Lund O. Nielsen M, et al. Protein Sci. 2003 May;12(5):1007-17. doi: 10.1110/ps.0239403. Protein Sci. 2003. PMID: 12717023 Free PMC article.
Selecting informative data for developing peptide-MHC binding predictors using a query by committee approach.
Christensen JK, Lamberth K, Nielsen M, Lundegaard C, Worning P, Lauemøller SL, Buus S, Brunak S, Lund O. Christensen JK, et al. Among authors: nielsen m. Neural Comput. 2003 Dec;15(12):2931-42. doi: 10.1162/089976603322518803. Neural Comput. 2003. PMID: 14629874
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.
Nielsen M, Lundegaard C, Worning P, Hvid CS, Lamberth K, Buus S, Brunak S, Lund O. Nielsen M, et al. Bioinformatics. 2004 Jun 12;20(9):1388-97. doi: 10.1093/bioinformatics/bth100. Epub 2004 Feb 12. Bioinformatics. 2004. PMID: 14962912
Definition of supertypes for HLA molecules using clustering of specificity matrices.
Lund O, Nielsen M, Kesmir C, Petersen AG, Lundegaard C, Worning P, Sylvester-Hvid C, Lamberth K, Røder G, Justesen S, Buus S, Brunak S. Lund O, et al. Among authors: nielsen m. Immunogenetics. 2004 Mar;55(12):797-810. doi: 10.1007/s00251-004-0647-4. Epub 2004 Feb 13. Immunogenetics. 2004. PMID: 14963618
The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage.
Nielsen M, Lundegaard C, Lund O, Keşmir C. Nielsen M, et al. Immunogenetics. 2005 Apr;57(1-2):33-41. doi: 10.1007/s00251-005-0781-7. Epub 2005 Mar 3. Immunogenetics. 2005. PMID: 15744535
An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.
Larsen MV, Lundegaard C, Lamberth K, Buus S, Brunak S, Lund O, Nielsen M. Larsen MV, et al. Among authors: nielsen m. Eur J Immunol. 2005 Aug;35(8):2295-303. doi: 10.1002/eji.200425811. Eur J Immunol. 2005. PMID: 15997466
Improved method for predicting linear B-cell epitopes.
Larsen JE, Lund O, Nielsen M. Larsen JE, et al. Among authors: nielsen m. Immunome Res. 2006 Apr 24;2:2. doi: 10.1186/1745-7580-2-2. Immunome Res. 2006. PMID: 16635264 Free PMC article.
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures.
Haste Andersen P, Nielsen M, Lund O. Haste Andersen P, et al. Among authors: nielsen m. Protein Sci. 2006 Nov;15(11):2558-67. doi: 10.1110/ps.062405906. Epub 2006 Sep 25. Protein Sci. 2006. PMID: 17001032 Free PMC article.
The validity of predicted T-cell epitopes.
Lundegaard C, Nielsen M, Lund O. Lundegaard C, et al. Among authors: nielsen m. Trends Biotechnol. 2006 Dec;24(12):537-8. doi: 10.1016/j.tibtech.2006.10.001. Epub 2006 Oct 12. Trends Biotechnol. 2006. PMID: 17045685
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