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Specifying RNA-Binding Regions in Proteins by Peptide Cross-Linking and Affinity Purification.
Mullari M, Lyon D, Jensen LJ, Nielsen ML. Mullari M, et al. Among authors: nielsen ml. J Proteome Res. 2017 Aug 4;16(8):2762-2772. doi: 10.1021/acs.jproteome.7b00042. Epub 2017 Jul 7. J Proteome Res. 2017. PMID: 28648085
Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.
Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML. Danielsen JM, et al. Among authors: nielsen ml. Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. doi: 10.1074/mcp.M110.003590. Epub 2010 Dec 7. Mol Cell Proteomics. 2011. PMID: 21139048 Free PMC article.
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C. Wagner SA, et al. Among authors: nielsen ml. Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. doi: 10.1074/mcp.M111.013284. Epub 2011 Sep 1. Mol Cell Proteomics. 2011. PMID: 21890473 Free PMC article.
Optimized fast and sensitive acquisition methods for shotgun proteomics on a quadrupole orbitrap mass spectrometer.
Kelstrup CD, Young C, Lavallee R, Nielsen ML, Olsen JV. Kelstrup CD, et al. Among authors: nielsen ml. J Proteome Res. 2012 Jun 1;11(6):3487-97. doi: 10.1021/pr3000249. Epub 2012 May 10. J Proteome Res. 2012. PMID: 22537090
RNA-DNA sequence differences spell genetic code ambiguities.
Bentin T, Nielsen ML. Bentin T, et al. Among authors: nielsen ml. Artif DNA PNA XNA. 2011 Jul-Dec;2(3):69-70. doi: 10.4161/adna.17086. Artif DNA PNA XNA. 2011. PMID: 22567189 Free PMC article.
Comprehensive profiling of proteome changes upon sequential deletion of deubiquitylating enzymes.
Poulsen JW, Madsen CT, Young C, Kelstrup CD, Grell HC, Henriksen P, Juhl-Jensen L, Nielsen ML. Poulsen JW, et al. Among authors: nielsen ml. J Proteomics. 2012 Jul 16;75(13):3886-97. doi: 10.1016/j.jprot.2012.04.055. Epub 2012 May 24. J Proteomics. 2012. PMID: 22634085
Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C. Wagner SA, et al. Among authors: nielsen ml. Mol Cell Proteomics. 2012 Dec;11(12):1578-85. doi: 10.1074/mcp.M112.017905. Epub 2012 Jul 11. Mol Cell Proteomics. 2012. PMID: 22790023 Free PMC article.
Advances in characterizing ubiquitylation sites by mass spectrometry.
Sylvestersen KB, Young C, Nielsen ML. Sylvestersen KB, et al. Among authors: nielsen ml. Curr Opin Chem Biol. 2013 Feb;17(1):49-58. doi: 10.1016/j.cbpa.2012.12.009. Epub 2013 Jan 5. Curr Opin Chem Biol. 2013. PMID: 23298953 Review.
Proteome-wide identification of poly(ADP-Ribosyl)ation targets in different genotoxic stress responses.
Jungmichel S, Rosenthal F, Altmeyer M, Lukas J, Hottiger MO, Nielsen ML. Jungmichel S, et al. Among authors: nielsen ml. Mol Cell. 2013 Oct 24;52(2):272-85. doi: 10.1016/j.molcel.2013.08.026. Epub 2013 Sep 19. Mol Cell. 2013. PMID: 24055347
Glutamine methylation in histone H2A is an RNA-polymerase-I-dedicated modification.
Tessarz P, Santos-Rosa H, Robson SC, Sylvestersen KB, Nelson CJ, Nielsen ML, Kouzarides T. Tessarz P, et al. Among authors: nielsen ml. Nature. 2014 Jan 23;505(7484):564-8. doi: 10.1038/nature12819. Epub 2013 Dec 18. Nature. 2014. PMID: 24352239 Free PMC article.
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