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A post-processing method for optimizing synthesis strategy for oligonucleotide microarrays.
Ning K, Choi KP, Leong HW, Zhang L. Ning K, et al. Nucleic Acids Res. 2005 Sep 28;33(17):e144. doi: 10.1093/nar/gni147. Nucleic Acids Res. 2005. PMID: 16192568 Free PMC article.
An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry.
Ning K, Ng HK, Leong HW. Ning K, et al. Genome Inform. 2007;19:119-30. Genome Inform. 2007. PMID: 18546510
Two-phase Filtering Strategy for Efficient Peptide Identification from Mass Spectrometry.
Ng HK, Ning K, Leong HW. Ng HK, et al. Among authors: ning k. J Proteomics Bioinform. 2010 Apr 1;3:121-129. doi: 10.4172/jpb.1000130. J Proteomics Bioinform. 2010. PMID: 20717493 Free PMC article.
Refining Markov Clustering for protein complex prediction by incorporating core-attachment structure.
Srihari S, Ning K, Leong HW. Srihari S, et al. Among authors: ning k. Genome Inform. 2009 Oct;23(1):159-68. Genome Inform. 2009. PMID: 20180271
On preprocessing and antisymmetry in de novo peptide sequencing: improving efficiency and accuracy.
Ning K, Ye N, Leong HW. Ning K, et al. J Bioinform Comput Biol. 2008 Jun;6(3):467-92. doi: 10.1142/s0219720008003503. J Bioinform Comput Biol. 2008. PMID: 18574859
Using indirect protein-protein interactions for protein complex prediction.
Chua HN, Ning K, Sung WK, Leong HW, Wong L. Chua HN, et al. Among authors: ning k. J Bioinform Comput Biol. 2008 Jun;6(3):435-66. doi: 10.1142/s0219720008003497. J Bioinform Comput Biol. 2008. PMID: 18574858
Algorithm for peptide sequencing by tandem mass spectrometry based on better preprocessing and anti-symmetric computational model.
Ning K, Leong HW. Ning K, et al. Comput Syst Bioinformatics Conf. 2007;6:19-30. Comput Syst Bioinformatics Conf. 2007. PMID: 17951809
PepSOM: an algorithm for peptide identification by tandem mass spectrometry based on SOM.
Ning K, Ng HK, Leong HW. Ning K, et al. Genome Inform. 2006;17(2):194-205. Genome Inform. 2006. PMID: 17503392
The distribution and deposition algorithm for multiple oligo nucleotide arrays.
Ning K, Leong HW. Ning K, et al. Genome Inform. 2006;17(2):89-99. Genome Inform. 2006. PMID: 17503382
Modeling and characterization of multi-charge mass spectra for peptide sequencing.
Chong KF, Ning K, Leong HW, Pevzner P. Chong KF, et al. Among authors: ning k. J Bioinform Comput Biol. 2006 Dec;4(6):1329-52. doi: 10.1142/s021972000600248x. J Bioinform Comput Biol. 2006. PMID: 17245817
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