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Meta-QC-Chain: comprehensive and fast quality control method for metagenomic data.
Zhou Q, Su X, Jing G, Ning K. Zhou Q, et al. Among authors: ning k. Genomics Proteomics Bioinformatics. 2014 Feb;12(1):52-6. doi: 10.1016/j.gpb.2014.01.002. Epub 2014 Feb 4. Genomics Proteomics Bioinformatics. 2014. PMID: 24508279 Free PMC article.
The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment.
Ning K, Nesvizhskii AI. Ning K, et al. BMC Bioinformatics. 2010 Dec 14;11 Suppl 11(Suppl 11):S14. doi: 10.1186/1471-2105-11-S11-S14. BMC Bioinformatics. 2010. PMID: 21172049 Free PMC article.
MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data.
Murillo GH, You N, Su X, Cui W, Reilly MP, Li M, Ning K, Cui X. Murillo GH, et al. Among authors: ning k. Bioinformatics. 2016 May 15;32(10):1486-92. doi: 10.1093/bioinformatics/btv753. Epub 2016 Jan 18. Bioinformatics. 2016. PMID: 26787661 Free PMC article.
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Wang C, Zhang H, Zheng WM, Xu D, Zhu J, Wang B, Ning K, Sun S, Li SC, Bu D. Wang C, et al. Among authors: ning k. Bioinformatics. 2016 Feb 1;32(3):462-4. doi: 10.1093/bioinformatics/btv581. Epub 2015 Oct 10. Bioinformatics. 2016. PMID: 26454278 Free PMC article.
Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan.
Cheng X, Su X, Chen X, Zhao H, Bo C, Xu J, Bai H, Ning K. Cheng X, et al. Among authors: ning k. Sci Rep. 2014 Jun 3;4:5147. doi: 10.1038/srep05147. Sci Rep. 2014. PMID: 24888649 Free PMC article.
Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization.
Su X, Pan W, Song B, Xu J, Ning K. Su X, et al. Among authors: ning k. PLoS One. 2014 Mar 3;9(3):e89323. doi: 10.1371/journal.pone.0089323. eCollection 2014. PLoS One. 2014. PMID: 24595159 Free PMC article.
GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU.
Su X, Wang X, Jing G, Ning K. Su X, et al. Among authors: ning k. Bioinformatics. 2014 Apr 1;30(7):1031-3. doi: 10.1093/bioinformatics/btt736. Epub 2013 Dec 19. Bioinformatics. 2014. PMID: 24363375
QC-Chain: fast and holistic quality control method for next-generation sequencing data.
Zhou Q, Su X, Wang A, Xu J, Ning K. Zhou Q, et al. Among authors: ning k. PLoS One. 2013;8(4):e60234. doi: 10.1371/journal.pone.0060234. Epub 2013 Apr 2. PLoS One. 2013. PMID: 23565205 Free PMC article.
SNP calling using genotype model selection on high-throughput sequencing data.
You N, Murillo G, Su X, Zeng X, Xu J, Ning K, Zhang S, Zhu J, Cui X. You N, et al. Among authors: ning k. Bioinformatics. 2012 Mar 1;28(5):643-50. doi: 10.1093/bioinformatics/bts001. Epub 2012 Jan 16. Bioinformatics. 2012. PMID: 22253293 Free PMC article.
Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.
Su X, Xu J, Ning K. Su X, et al. Among authors: ning k. Bioinformatics. 2012 Oct 1;28(19):2493-501. doi: 10.1093/bioinformatics/bts470. Epub 2012 Jul 26. Bioinformatics. 2012. PMID: 22843983
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