Nitsche BM - Search Results

1

The carbon starvation response of Aspergillus niger during submerged cultivation: insights from the transcriptome and secretome.

Nitsche BM, Jørgensen TR, Akeroyd M, Meyer V, Ram AF. Nitsche BM, et al. BMC Genomics. 2012 Aug 8;13:380. doi: 10.1186/1471-2164-13-380. BMC Genomics. 2012. PMID: 22873931 Free PMC article.

2

Reconstruction of signaling networks regulating fungal morphogenesis by transcriptomics.

Meyer V, Arentshorst M, Flitter SJ, Nitsche BM, Kwon MJ, Reynaga-Peña CG, Bartnicki-Garcia S, van den Hondel CA, Ram AF. Meyer V, et al. Among authors: nitsche bm. Eukaryot Cell. 2009 Nov;8(11):1677-91. doi: 10.1128/EC.00050-09. Epub 2009 Sep 11. Eukaryot Cell. 2009. PMID: 19749177 Free PMC article.

3

Transcriptomic insights into the physiology of Aspergillus niger approaching a specific growth rate of zero.

Jørgensen TR, Nitsche BM, Lamers GE, Arentshorst M, van den Hondel CA, Ram AF. Jørgensen TR, et al. Among authors: nitsche bm. Appl Environ Microbiol. 2010 Aug;76(16):5344-55. doi: 10.1128/AEM.00450-10. Epub 2010 Jun 18. Appl Environ Microbiol. 2010. PMID: 20562270 Free PMC article.

4

New resources for functional analysis of omics data for the genus Aspergillus.

Nitsche BM, Crabtree J, Cerqueira GC, Meyer V, Ram AF, Wortman JR. Nitsche BM, et al. BMC Genomics. 2011 Oct 5;12:486. doi: 10.1186/1471-2164-12-486. BMC Genomics. 2011. PMID: 21974739 Free PMC article.

5

The use of open source bioinformatics tools to dissect transcriptomic data.

Nitsche BM, Ram AF, Meyer V. Nitsche BM, et al. Methods Mol Biol. 2012;835:311-31. doi: 10.1007/978-1-61779-501-5_19. Methods Mol Biol. 2012. PMID: 22183662

6

Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress.

Carvalho ND, Jørgensen TR, Arentshorst M, Nitsche BM, van den Hondel CA, Archer DB, Ram AF. Carvalho ND, et al. Among authors: nitsche bm. BMC Genomics. 2012 Jul 30;13:350. doi: 10.1186/1471-2164-13-350. BMC Genomics. 2012. PMID: 22846479 Free PMC article.

7

The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger.

Kwon MJ, Jørgensen TR, Nitsche BM, Arentshorst M, Park J, Ram AF, Meyer V. Kwon MJ, et al. Among authors: nitsche bm. BMC Genomics. 2012 Dec 13;13:701. doi: 10.1186/1471-2164-13-701. BMC Genomics. 2012. PMID: 23237452 Free PMC article.

8

Autophagy promotes survival in aging submerged cultures of the filamentous fungus Aspergillus niger.

Nitsche BM, Burggraaf-van Welzen AM, Lamers G, Meyer V, Ram AF. Nitsche BM, et al. Appl Microbiol Biotechnol. 2013 Sep;97(18):8205-18. doi: 10.1007/s00253-013-4971-1. Epub 2013 May 23. Appl Microbiol Biotechnol. 2013. PMID: 23700238

9

The transcriptomic signature of RacA activation and inactivation provides new insights into the morphogenetic network of Aspergillus niger.

Kwon MJ, Nitsche BM, Arentshorst M, Jørgensen TR, Ram AF, Meyer V. Kwon MJ, et al. Among authors: nitsche bm. PLoS One. 2013 Jul 24;8(7):e68946. doi: 10.1371/journal.pone.0068946. Print 2013. PLoS One. 2013. PMID: 23894378 Free PMC article.

10

The transcriptional repressor TupA in Aspergillus niger is involved in controlling gene expression related to cell wall biosynthesis, development, and nitrogen source availability.

Schachtschabel D, Arentshorst M, Nitsche BM, Morris S, Nielsen KF, van den Hondel CA, Klis FM, Ram AF. Schachtschabel D, et al. Among authors: nitsche bm. PLoS One. 2013 Oct 29;8(10):e78102. doi: 10.1371/journal.pone.0078102. eCollection 2013. PLoS One. 2013. PMID: 24205111 Free PMC article.

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