Niv MY - Search Results

1

Modeling activated states of GPCRs: the rhodopsin template.

Niv MY, Skrabanek L, Filizola M, Weinstein H. Niv MY, et al. J Comput Aided Mol Des. 2006 Jul-Aug;20(7-8):437-48. doi: 10.1007/s10822-006-9061-3. Epub 2006 Nov 11. J Comput Aided Mol Des. 2006. PMID: 17103019 Free PMC article.

2

PDZBase: a protein-protein interaction database for PDZ-domains.

Beuming T, Skrabanek L, Niv MY, Mukherjee P, Weinstein H. Beuming T, et al. Among authors: niv my. Bioinformatics. 2005 Mar;21(6):827-8. doi: 10.1093/bioinformatics/bti098. Epub 2004 Oct 28. Bioinformatics. 2005. PMID: 15513994

3

Molecular determinants for the complex binding specificity of the PDZ domain in PICK1.

Madsen KL, Beuming T, Niv MY, Chang CW, Dev KK, Weinstein H, Gether U. Madsen KL, et al. Among authors: niv my. J Biol Chem. 2005 May 27;280(21):20539-48. doi: 10.1074/jbc.M500577200. Epub 2005 Mar 17. J Biol Chem. 2005. PMID: 15774468 Free article.

4

A flexible docking procedure for the exploration of peptide binding selectivity to known structures and homology models of PDZ domains.

Niv MY, Weinstein H. Niv MY, et al. J Am Chem Soc. 2005 Oct 12;127(40):14072-9. doi: 10.1021/ja054195s. J Am Chem Soc. 2005. PMID: 16201829

5

Topology of Type II REases revisited; structural classes and the common conserved core.

Niv MY, Ripoll DR, Vila JA, Liwo A, Vanamee ES, Aggarwal AK, Weinstein H, Scheraga HA. Niv MY, et al. Nucleic Acids Res. 2007;35(7):2227-37. doi: 10.1093/nar/gkm045. Epub 2007 Mar 16. Nucleic Acids Res. 2007. PMID: 17369272 Free PMC article.

6

Influence of oligomerization on the dynamics of G-protein coupled receptors as assessed by normal mode analysis.

Niv MY, Filizola M. Niv MY, et al. Proteins. 2008 May 1;71(2):575-86. doi: 10.1002/prot.21787. Proteins. 2008. PMID: 17963239 Free PMC article.

7

Identification of GATC- and CCGG-recognizing Type II REases and their putative specificity-determining positions using Scan2S--a novel motif scan algorithm with optional secondary structure constraints.

Niv MY, Skrabanek L, Roberts RJ, Scheraga HA, Weinstein H. Niv MY, et al. Proteins. 2008 May 1;71(2):631-40. doi: 10.1002/prot.21777. Proteins. 2008. PMID: 17972284 Free PMC article.

8

Scan2S: increasing the precision of PROSITE pattern motifs using secondary structure constraints.

Skrabanek L, Niv MY. Skrabanek L, et al. Among authors: niv my. Proteins. 2008 Sep;72(4):1138-47. doi: 10.1002/prot.22008. Proteins. 2008. PMID: 18320586

9

Membrane localization is critical for activation of the PICK1 BAR domain.

Madsen KL, Eriksen J, Milan-Lobo L, Han DS, Niv MY, Ammendrup-Johnsen I, Henriksen U, Bhatia VK, Stamou D, Sitte HH, McMahon HT, Weinstein H, Gether U. Madsen KL, et al. Among authors: niv my. Traffic. 2008 Aug;9(8):1327-43. doi: 10.1111/j.1600-0854.2008.00761.x. Epub 2008 May 8. Traffic. 2008. PMID: 18466293 Free PMC article.

10

Predicting GPCR promiscuity using binding site features.

Levit A, Beuming T, Krilov G, Sherman W, Niv MY. Levit A, et al. Among authors: niv my. J Chem Inf Model. 2014 Jan 27;54(1):184-94. doi: 10.1021/ci400552z. Epub 2013 Dec 27. J Chem Inf Model. 2014. PMID: 24328091

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