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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.
Kopylova E, Noé L, Touzet H. Kopylova E, et al. Among authors: noe l. Bioinformatics. 2012 Dec 15;28(24):3211-7. doi: 10.1093/bioinformatics/bts611. Epub 2012 Oct 15. Bioinformatics. 2012. PMID: 23071270
DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.
Saad C, Noé L, Richard H, Leclerc J, Buisine MP, Touzet H, Figeac M. Saad C, et al. Among authors: noe l. BMC Bioinformatics. 2018 Jun 11;19(1):223. doi: 10.1186/s12859-018-2215-1. BMC Bioinformatics. 2018. PMID: 29890948 Free PMC article.
Deciphering metatranscriptomic data.
Kopylova E, Noé L, Da Silva C, Berthelot JF, Alberti A, Aury JM, Touzet H. Kopylova E, et al. Among authors: noe l. Methods Mol Biol. 2015;1269:279-91. doi: 10.1007/978-1-4939-2291-8_17. Methods Mol Biol. 2015. PMID: 25577385
Designing Efficient Spaced Seeds for SOLiD Read Mapping.
Noé L, Gîrdea M, Kucherov G. Noé L, et al. Adv Bioinformatics. 2010;2010:708501. doi: 10.1155/2010/708501. Epub 2010 Sep 16. Adv Bioinformatics. 2010. PMID: 20936175 Free PMC article.
A coverage criterion for spaced seeds and its applications to support vector machine string kernels and k-mer distances.
Noé L, Martin DE. Noé L, et al. J Comput Biol. 2014 Dec;21(12):947-63. doi: 10.1089/cmb.2014.0173. J Comput Biol. 2014. PMID: 25393923 Free PMC article.
A unifying framework for seed sensitivity and its application to subset seeds.
Kucherov G, Noé L, Roytberg M. Kucherov G, et al. Among authors: noe l. J Bioinform Comput Biol. 2006 Apr;4(2):553-69. doi: 10.1142/s0219720006001977. J Bioinform Comput Biol. 2006. PMID: 16819802 Free PMC article.
On subset seeds for protein alignment.
Roytberg M, Gambin A, Noé L, Lasota S, Furletova E, Szczurek E, Kucherov G. Roytberg M, et al. Among authors: noe l. IEEE/ACM Trans Comput Biol Bioinform. 2009 Jul-Sep;6(3):483-94. doi: 10.1109/TCBB.2009.4. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19644175
Optimal neighborhood indexing for protein similarity search.
Peterlongo P, Noé L, Lavenier D, Nguyen VH, Kucherov G, Giraud M. Peterlongo P, et al. Among authors: noe l. BMC Bioinformatics. 2008 Dec 16;9:534. doi: 10.1186/1471-2105-9-534. BMC Bioinformatics. 2008. PMID: 19087280 Free PMC article.
Multiseed lossless filtration.
Kucherov G, Noé L, Roytberg M. Kucherov G, et al. Among authors: noe l. IEEE/ACM Trans Comput Biol Bioinform. 2005 Jan-Mar;2(1):51-61. doi: 10.1109/TCBB.2005.12. IEEE/ACM Trans Comput Biol Bioinform. 2005. PMID: 17044164
Improved hit criteria for DNA local alignment.
Noé L, Kucherov G. Noé L, et al. BMC Bioinformatics. 2004 Oct 14;5:149. doi: 10.1186/1471-2105-5-149. BMC Bioinformatics. 2004. PMID: 15485572 Free PMC article.
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