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233 results
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Computing exact p-values for a cross-correlation shotgun proteomics score function.
Howbert JJ, Noble WS. Howbert JJ, et al. Among authors: noble ws. Mol Cell Proteomics. 2014 Sep;13(9):2467-79. doi: 10.1074/mcp.O113.036327. Epub 2014 Jun 2. Mol Cell Proteomics. 2014. PMID: 24895379 Free PMC article.
Learning gene functional classifications from multiple data types.
Pavlidis P, Weston J, Cai J, Noble WS. Pavlidis P, et al. Among authors: noble ws. J Comput Biol. 2002;9(2):401-11. doi: 10.1089/10665270252935539. J Comput Biol. 2002. PMID: 12015889
A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores.
Anderson DC, Li W, Payan DG, Noble WS. Anderson DC, et al. Among authors: noble ws. J Proteome Res. 2003 Mar-Apr;2(2):137-46. doi: 10.1021/pr0255654. J Proteome Res. 2003. PMID: 12716127
Protein family classification using sparse markov transducers.
Eskin E, Noble WS, Singer Y. Eskin E, et al. Among authors: noble ws. J Comput Biol. 2003;10(2):187-213. doi: 10.1089/106652703321825964. J Comput Biol. 2003. PMID: 12804091
Large-scale identification of yeast integral membrane protein interactions.
Miller JP, Lo RS, Ben-Hur A, Desmarais C, Stagljar I, Noble WS, Fields S. Miller JP, et al. Among authors: noble ws. Proc Natl Acad Sci U S A. 2005 Aug 23;102(34):12123-8. doi: 10.1073/pnas.0505482102. Epub 2005 Aug 10. Proc Natl Acad Sci U S A. 2005. PMID: 16093310 Free PMC article.
Peptide charge state determination for low-resolution tandem mass spectra.
Klammer AA, Wu CC, MacCoss MJ, Noble WS. Klammer AA, et al. Among authors: noble ws. Proc IEEE Comput Syst Bioinform Conf. 2005:175-85. doi: 10.1109/csb.2005.44. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447975
Efficient identification of DNA hybridization partners in a sequence database.
Mann TP, Noble WS. Mann TP, et al. Among authors: noble ws. Bioinformatics. 2006 Jul 15;22(14):e350-8. doi: 10.1093/bioinformatics/btl240. Bioinformatics. 2006. PMID: 16873493
AVAILABILITY: Software implementing the algorithms described here is available at http://noble.gs.washington.edu/proj/dna-binding....
AVAILABILITY: Software implementing the algorithms described here is available at http://noble.gs.washington.edu/proj/dna-binding....
Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.
Frewen BE, Merrihew GE, Wu CC, Noble WS, MacCoss MJ. Frewen BE, et al. Among authors: noble ws. Anal Chem. 2006 Aug 15;78(16):5678-84. doi: 10.1021/ac060279n. Anal Chem. 2006. PMID: 16906711
A structural alignment kernel for protein structures.
Qiu J, Hue M, Ben-Hur A, Vert JP, Noble WS. Qiu J, et al. Among authors: noble ws. Bioinformatics. 2007 May 1;23(9):1090-8. doi: 10.1093/bioinformatics/btl642. Epub 2007 Jan 18. Bioinformatics. 2007. PMID: 17234638
AVAILABILITY: http://noble.gs.washington.edu/proj/3dkernel...
AVAILABILITY: http://noble.gs.washington.edu/proj/3dkernel...
Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions.
Klammer AA, Yi X, MacCoss MJ, Noble WS. Klammer AA, et al. Among authors: noble ws. Anal Chem. 2007 Aug 15;79(16):6111-8. doi: 10.1021/ac070262k. Epub 2007 Jul 11. Anal Chem. 2007. PMID: 17622186
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