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Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene.
Zhu F, Massana R, Not F, Marie D, Vaulot D. Zhu F, et al. FEMS Microbiol Ecol. 2005 Mar 1;52(1):79-92. doi: 10.1016/j.femsec.2004.10.006. Epub 2004 Dec 22. FEMS Microbiol Ecol. 2005. PMID: 16329895
Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network.
Meng A, Corre E, Probert I, Gutierrez-Rodriguez A, Siano R, Annamale A, Alberti A, Da Silva C, Wincker P, Le Crom S, Not F, Bittner L. Meng A, et al. Mol Ecol. 2018 May;27(10):2365-2380. doi: 10.1111/mec.14579. Epub 2018 May 3. Mol Ecol. 2018. PMID: 29624751
., sxtA4 and sxtG) were not specific to known toxin-producing species. Although not fully specific to symbiosis, the most represented functions associated with proteins involved in the symbiotic trait were related to membrane processes and ion transport. ...
., sxtA4 and sxtG) were not specific to known toxin-producing species. Although not fully specific to symbiosis, the most repr …
Ocean plankton. Structure and function of the global ocean microbiome.
Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, Ferrera I, Gasol JM, Guidi L, Hildebrand F, Kokoszka F, Lepoivre C, Lima-Mendez G, Poulain J, Poulos BT, Royo-Llonch M, Sarmento H, Vieira-Silva S, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans coordinators, Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Not F, Ogata H, Pesant S, Speich S, Stemmann L, Sullivan MB, Weissenbach J, Wincker P, Karsenti E, Raes J, Acinas SG, Bork P. Sunagawa S, et al. Science. 2015 May 22;348(6237):1261359. doi: 10.1126/science.1261359. Science. 2015. PMID: 25999513
Biogeography and diversity of Collodaria (Radiolaria) in the global ocean.
Biard T, Bigeard E, Audic S, Poulain J, Gutierrez-Rodriguez A, Pesant S, Stemmann L, Not F. Biard T, et al. ISME J. 2017 Jun;11(6):1331-1344. doi: 10.1038/ismej.2017.12. Epub 2017 Mar 24. ISME J. 2017. PMID: 28338675 Free PMC article.
Patterns of rare and abundant marine microbial eukaryotes.
Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R. Logares R, et al. Curr Biol. 2014 Apr 14;24(8):813-21. doi: 10.1016/j.cub.2014.02.050. Epub 2014 Apr 3. Curr Biol. 2014. PMID: 24704080
Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics and ecosystem functioning, microbiologists normally do not differentiate between them. ...
Although abundant and rare subcommunities may present intrinsic characteristics that could be crucial for understanding community dynamics a …
New insights into the diversity of marine picoeukaryotes.
Not F, del Campo J, Balagué V, de Vargas C, Massana R. Not F, et al. PLoS One. 2009 Sep 29;4(9):e7143. doi: 10.1371/journal.pone.0007143. PLoS One. 2009. PMID: 19787059 Free PMC article.
This PCR-free approach revealed similar phylogenetic patterns to clone library surveys, suggesting that PCR steps do not impose major biases in the exploration of environmental DNA. ...
This PCR-free approach revealed similar phylogenetic patterns to clone library surveys, suggesting that PCR steps do not impose major …
A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications.
Arrigoni R, Vacherie B, Benzoni F, Stefani F, Karsenti E, Jaillon O, Not F, Nunes F, Payri C, Wincker P, Barbe V. Arrigoni R, et al. Mol Ecol Resour. 2017 Sep;17(5):1054-1071. doi: 10.1111/1755-0998.12640. Epub 2017 Jan 23. Mol Ecol Resour. 2017. PMID: 27889948
Intracellular diversity of the V4 and V9 regions of the 18S rRNA in marine protists (radiolarians) assessed by high-throughput sequencing.
Decelle J, Romac S, Sasaki E, Not F, Mahé F. Decelle J, et al. PLoS One. 2014 Aug 4;9(8):e104297. doi: 10.1371/journal.pone.0104297. eCollection 2014. PLoS One. 2014. PMID: 25090095 Free PMC article.
Diversity of photosynthetic picoeukaryotes in eutrophic shallow lakes as assessed by combining flow cytometry cell-sorting and high throughput sequencing.
Metz S, Lopes Dos Santos A, Berman MC, Bigeard E, Licursi M, Not F, Lara E, Unrein F. Metz S, et al. Among authors: not f. FEMS Microbiol Ecol. 2019 May 1;95(5):fiz038. doi: 10.1093/femsec/fiz038. FEMS Microbiol Ecol. 2019. PMID: 30889236
Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry.
Biegala IC, Not F, Vaulot D, Simon N. Biegala IC, et al. Appl Environ Microbiol. 2003 Sep;69(9):5519-29. doi: 10.1128/aem.69.9.5519-5529.2003. Appl Environ Microbiol. 2003. PMID: 12957941 Free PMC article.
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