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MicroRNA-9 Couples Brain Neurogenesis and Angiogenesis.
Cell Rep. 2017 Aug 15;20(7):1533-1542. doi: 10.1016/j.celrep.2017.07.051.
Cell Rep. 2017.
PMID: 28813666
Free PMC article.
A screen for deeply conserved non-coding GWAS SNPs uncovers a MIR-9-2 functional mutation associated to retinal vasculature defects in human.
Madelaine R, Notwell JH, Skariah G, Halluin C, Chen CC, Bejerano G, Mourrain P.
Madelaine R, et al. Among authors: notwell jh.
Nucleic Acids Res. 2018 Apr 20;46(7):3517-3531. doi: 10.1093/nar/gky166.
Nucleic Acids Res. 2018.
PMID: 29518216
Free PMC article.
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A family of transposable elements co-opted into developmental enhancers in the mouse neocortex.
Notwell JH, Chung T, Heavner W, Bejerano G.
Notwell JH, et al.
Nat Commun. 2015 Mar 25;6:6644. doi: 10.1038/ncomms7644.
Nat Commun. 2015.
PMID: 25806706
Free PMC article.
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TBR1 regulates autism risk genes in the developing neocortex.
Notwell JH, Heavner WE, Darbandi SF, Katzman S, McKenna WL, Ortiz-Londono CF, Tastad D, Eckler MJ, Rubenstein JL, McConnell SK, Chen B, Bejerano G.
Notwell JH, et al.
Genome Res. 2016 Aug;26(8):1013-22. doi: 10.1101/gr.203612.115. Epub 2016 Jun 20.
Genome Res. 2016.
PMID: 27325115
Free PMC article.
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Transcription factor expression defines subclasses of developing projection neurons highly similar to single-cell RNA-seq subtypes.
Heavner WE, Ji S, Notwell JH, Dyer ES, Tseng AM, Birgmeier J, Yoo B, Bejerano G, McConnell SK.
Heavner WE, et al. Among authors: notwell jh.
Proc Natl Acad Sci U S A. 2020 Oct 6;117(40):25074-25084. doi: 10.1073/pnas.2008013117. Epub 2020 Sep 18.
Proc Natl Acad Sci U S A. 2020.
PMID: 32948690
Free PMC article.
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The enhancer landscape during early neocortical development reveals patterns of dense regulation and co-option.
Wenger AM, Clarke SL, Notwell JH, Chung T, Tuteja G, Guturu H, Schaar BT, Bejerano G.
Wenger AM, et al. Among authors: notwell jh.
PLoS Genet. 2013 Aug;9(8):e1003728. doi: 10.1371/journal.pgen.1003728. Epub 2013 Aug 29.
PLoS Genet. 2013.
PMID: 24009522
Free PMC article.
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Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish.
Hiller M, Agarwal S, Notwell JH, Parikh R, Guturu H, Wenger AM, Bejerano G.
Hiller M, et al. Among authors: notwell jh.
Nucleic Acids Res. 2013 Aug;41(15):e151. doi: 10.1093/nar/gkt557. Epub 2013 Jun 27.
Nucleic Acids Res. 2013.
PMID: 23814184
Free PMC article.
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A Guide to Single-Cell Transcriptomics in Adult Rodent Brain: The Medium Spiny Neuron Transcriptome Revisited.
Ho H, Both M, Siniard A, Sharma S, Notwell JH, Wallace M, Leone DP, Nguyen A, Zhao E, Lee H, Zwilling D, Thompson KR, Braithwaite SP, Huentelman M, Portmann T.
Ho H, et al. Among authors: notwell jh.
Front Cell Neurosci. 2018 Jun 15;12:159. doi: 10.3389/fncel.2018.00159. eCollection 2018.
Front Cell Neurosci. 2018.
PMID: 29970990
Free PMC article.
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