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743 results

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Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.
Chitsaz H, Yee-Greenbaum JL, Tesler G, Lombardo MJ, Dupont CL, Badger JH, Novotny M, Rusch DB, Fraser LJ, Gormley NA, Schulz-Trieglaff O, Smith GP, Evers DJ, Pevzner PA, Lasken RS. Chitsaz H, et al. Among authors: novotny m. Nat Biotechnol. 2011 Sep 18;29(10):915-21. doi: 10.1038/nbt.1966. Nat Biotechnol. 2011. PMID: 21926975 Free PMC article.
Genomic sequencing of single microbial cells from environmental samples.
Ishoey T, Woyke T, Stepanauskas R, Novotny M, Lasken RS. Ishoey T, et al. Among authors: novotny m. Curr Opin Microbiol. 2008 Jun;11(3):198-204. doi: 10.1016/j.mib.2008.05.006. Epub 2008 Jun 10. Curr Opin Microbiol. 2008. PMID: 18550420 Free PMC article. Review.
Single virus genomics: a new tool for virus discovery.
Allen LZ, Ishoey T, Novotny MA, McLean JS, Lasken RS, Williamson SJ. Allen LZ, et al. PLoS One. 2011 Mar 23;6(3):e17722. doi: 10.1371/journal.pone.0017722. PLoS One. 2011. PMID: 21436882 Free PMC article.
Going deeper: metagenome of a hadopelagic microbial community.
Eloe EA, Fadrosh DW, Novotny M, Zeigler Allen L, Kim M, Lombardo MJ, Yee-Greenbaum J, Yooseph S, Allen EE, Lasken R, Williamson SJ, Bartlett DH. Eloe EA, et al. Among authors: novotny m. PLoS One. 2011;6(5):e20388. doi: 10.1371/journal.pone.0020388. Epub 2011 May 24. PLoS One. 2011. PMID: 21629664 Free PMC article.
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.
Dupont CL, Rusch DB, Yooseph S, Lombardo MJ, Richter RA, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH, Halpern AL, Lasken RS, Nealson K, Friedman R, Venter JC. Dupont CL, et al. Among authors: novotny m. ISME J. 2012 Jun;6(6):1186-99. doi: 10.1038/ismej.2011.189. Epub 2011 Dec 15. ISME J. 2012. PMID: 22170421 Free PMC article.
Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast.
Tagwerker C, Dupont CL, Karas BJ, Ma L, Chuang RY, Benders GA, Ramon A, Novotny M, Montague MG, Venepally P, Brami D, Schwartz A, Andrews-Pfannkoch C, Gibson DG, Glass JI, Smith HO, Venter JC, Hutchison CA 3rd. Tagwerker C, et al. Among authors: novotny m. Nucleic Acids Res. 2012 Nov 1;40(20):10375-83. doi: 10.1093/nar/gks823. Epub 2012 Aug 31. Nucleic Acids Res. 2012. PMID: 22941652 Free PMC article.
Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa.
Rusch DB, Lombardo MJ, Yee-Greenbaum J, Novotny M, Brinkac LM, Lasken RS, Dupont CL. Rusch DB, et al. Among authors: novotny m. Genome Announc. 2013 Jan;1(1):e00030-12. doi: 10.1128/genomeA.00030-12. Epub 2013 Jan 15. Genome Announc. 2013. PMID: 23405308 Free PMC article.
Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome.
Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS. Fitzsimons MS, et al. Among authors: novotny m. Genome Res. 2013 May;23(5):878-88. doi: 10.1101/gr.142208.112. Epub 2013 Mar 14. Genome Res. 2013. PMID: 23493677 Free PMC article.
Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform.
McLean JS, Lombardo MJ, Ziegler MG, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Nealson KH, Pevzner PA, Friedman R, Venter JC, Lasken RS. McLean JS, et al. Among authors: novotny m. Genome Res. 2013 May;23(5):867-77. doi: 10.1101/gr.150433.112. Epub 2013 Apr 5. Genome Res. 2013. PMID: 23564253 Free PMC article.
743 results