Nueda MJ - Search Results

1

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.

Nueda MJ, Tarazona S, Conesa A. Nueda MJ, et al. Bioinformatics. 2014 Sep 15;30(18):2598-602. doi: 10.1093/bioinformatics/btu333. Epub 2014 Jun 3. Bioinformatics. 2014. PMID: 24894503 Free PMC article.

2

ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments.

Nueda MJ, Ferrer A, Conesa A. Nueda MJ, et al. Biostatistics. 2012 Jul;13(3):553-66. doi: 10.1093/biostatistics/kxr042. Epub 2011 Nov 14. Biostatistics. 2012. PMID: 22085896

3

Functional assessment of time course microarray data.

Nueda MJ, Sebastián P, Tarazona S, García-García F, Dopazo J, Ferrer A, Conesa A. Nueda MJ, et al. BMC Bioinformatics. 2009 Jun 16;10 Suppl 6(Suppl 6):S9. doi: 10.1186/1471-2105-10-S6-S9. BMC Bioinformatics. 2009. PMID: 19534758 Free PMC article.

4

Serial Expression Analysis: a web tool for the analysis of serial gene expression data.

Nueda MJ, Carbonell J, Medina I, Dopazo J, Conesa A. Nueda MJ, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W239-45. doi: 10.1093/nar/gkq488. Epub 2010 Jun 4. Nucleic Acids Res. 2010. PMID: 20525784 Free PMC article.

5

Identification and visualization of differential isoform expression in RNA-seq time series.

Nueda MJ, Martorell-Marugan J, Martí C, Tarazona S, Conesa A. Nueda MJ, et al. Bioinformatics. 2018 Feb 1;34(3):524-526. doi: 10.1093/bioinformatics/btx578. Bioinformatics. 2018. PMID: 28968682 Free PMC article.

6

Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package.

Tarazona S, Furió-Tarí P, Turrà D, Pietro AD, Nueda MJ, Ferrer A, Conesa A. Tarazona S, et al. Among authors: nueda mj. Nucleic Acids Res. 2015 Dec 2;43(21):e140. doi: 10.1093/nar/gkv711. Epub 2015 Jul 16. Nucleic Acids Res. 2015. PMID: 26184878 Free PMC article.

7

High-throughput functional annotation and data mining with the Blast2GO suite.

Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talón M, Dopazo J, Conesa A. Götz S, et al. Among authors: nueda mj. Nucleic Acids Res. 2008 Jun;36(10):3420-35. doi: 10.1093/nar/gkn176. Epub 2008 Apr 29. Nucleic Acids Res. 2008. PMID: 18445632 Free PMC article.

8

maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments.

Conesa A, Nueda MJ, Ferrer A, Talón M. Conesa A, et al. Among authors: nueda mj. Bioinformatics. 2006 May 1;22(9):1096-102. doi: 10.1093/bioinformatics/btl056. Epub 2006 Feb 15. Bioinformatics. 2006. PMID: 16481333

9

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.

Nueda MJ, Conesa A, Westerhuis JA, Hoefsloot HC, Smilde AK, Talón M, Ferrer A. Nueda MJ, et al. Bioinformatics. 2007 Jul 15;23(14):1792-800. doi: 10.1093/bioinformatics/btm251. Epub 2007 May 22. Bioinformatics. 2007. PMID: 17519250

10

Neurospora crassa transcriptomics reveals oxidative stress and plasma membrane homeostasis biology genes as key targets in response to chitosan.

Lopez-Moya F, Kowbel D, Nueda MJ, Palma-Guerrero J, Glass NL, Lopez-Llorca LV. Lopez-Moya F, et al. Among authors: nueda mj. Mol Biosyst. 2016 Feb;12(2):391-403. doi: 10.1039/c5mb00649j. Mol Biosyst. 2016. PMID: 26694141 Free PMC article.

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