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Orientation of the saccharide chains of glycolipids at the membrane surface: conformational analysis of the glucose-ceramide and the glucose-glyceride linkages using molecular mechanics (MM3).
Nyholm PG, Pascher I. Nyholm PG, et al. Biochemistry. 1993 Feb 9;32(5):1225-34. doi: 10.1021/bi00056a005. Biochemistry. 1993. PMID: 8448133
Conformation of the exopolysaccharide of Burkholderia cepacia predicted with molecular mechanics (MM3) using genetic algorithm search.
Strino F, Nahmany A, Rosen J, Kemp GJ, Sá-correia I, Nyholm PG. Strino F, et al. Carbohydr Res. 2005 Apr 11;340(5):1019-24. doi: 10.1016/j.carres.2004.12.031. Carbohydr Res. 2005. PMID: 15780266
Conformation of the branched O-specific polysaccharide of Shigella dysenteriae type 2: molecular mechanics calculations show a compact helical structure exposing an epitope which potentially mimics galabiose.
Rosen J, Robobi A, Nyholm PG. Rosen J, et al. Carbohydr Res. 2002 Oct 8;337(18):1633-40. doi: 10.1016/s0008-6215(02)00089-7. Carbohydr Res. 2002. PMID: 12423964
The conformations of the O-specific polysaccharides of Shigella dysenteriae type 4 and Escherichia coli O159 studied with molecular mechanics (MM3) filtered systematic search.
Rosen J, Robobi A, Nyholm PG. Rosen J, et al. Carbohydr Res. 2004 Apr 2;339(5):961-6. doi: 10.1016/j.carres.2003.11.018. Carbohydr Res. 2004. PMID: 15010303
Conformational analysis of thioglycoside derivatives of histo-blood group ABH antigens using an ab initio-derived reparameterization of MM4: implications for design of non-hydrolysable mimetics.
Strino F, Lii JH, Gabius HJ, Nyholm PG. Strino F, et al. Among authors: nyholm pg. J Comput Aided Mol Des. 2009 Dec;23(12):845-52. doi: 10.1007/s10822-009-9301-4. Epub 2009 Sep 15. J Comput Aided Mol Des. 2009. PMID: 19757090
Steric presentation and recognition of the saccharide chains of glycolipids at the cell surface: favoured conformations of the saccharide-lipid linkage calculated using molecular mechanics (MM3).
Nyholm PG, Pascher I. Nyholm PG, et al. Int J Biol Macromol. 1993 Feb;15(1):43-51. doi: 10.1016/s0141-8130(05)80087-x. Int J Biol Macromol. 1993. PMID: 8443132
Conformation of the O-specific polysaccharide of Shigella dysenteriae type 1: molecular modeling shows a helical structure with efficient exposure of the antigenic determinant alpha-L-Rhap-(1-->2)-alpha-D-Galp.
Nyholm PG, Mulard LA, Miller CE, Lew T, Olin R, Glaudemans CP. Nyholm PG, et al. Glycobiology. 2001 Nov;11(11):945-55. doi: 10.1093/glycob/11.11.945. Glycobiology. 2001. PMID: 11744629
Conformational analysis of blood group A-active glycosphingolipids using HSEA-calculations. The possible significance of the core oligosaccharide chain for the presentation and recognition of the A-determinant.
Nyholm PG, Samuelsson BE, Breimer M, Pascher I. Nyholm PG, et al. J Mol Recognit. 1989 Nov;2(3):103-13. doi: 10.1002/jmr.300020302. J Mol Recognit. 1989. PMID: 2636900
The effect of hydrogen bonds on the conformation of glycosphingolipids. Methylated and unmethylated cerebroside studied by X-ray single crystal analysis and model calculations.
Nyholm PG, Pascher I, Sundell S. Nyholm PG, et al. Chem Phys Lipids. 1990 Jan;52(1):1-10. doi: 10.1016/0009-3084(90)90002-9. Chem Phys Lipids. 1990. PMID: 2306786
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