Nykter M - Search Results

1

Transcriptome Sequencing Reveals PCAT5 as a Novel ERG-Regulated Long Noncoding RNA in Prostate Cancer.

Ylipää A, Kivinummi K, Kohvakka A, Annala M, Latonen L, Scaravilli M, Kartasalo K, Leppänen SP, Karakurt S, Seppälä J, Yli-Harja O, Tammela TL, Zhang W, Visakorpi T, Nykter M. Ylipää A, et al. Among authors: nykter m. Cancer Res. 2015 Oct 1;75(19):4026-31. doi: 10.1158/0008-5472.CAN-15-0217. Epub 2015 Aug 17. Cancer Res. 2015. PMID: 26282172

2

Unsupervised analysis uncovers changes in histopathologic diagnosis in supervised genomic studies.

Nykter M, Hunt KK, Pollock RE, El-Naggar AK, Taylor E, Shmulevich I, Yli-Harja O, Zhang W. Nykter M, et al. Technol Cancer Res Treat. 2006 Apr;5(2):177-82. doi: 10.1177/153303460600500209. Technol Cancer Res Treat. 2006. PMID: 16551137 Free article.

3

Simulation of microarray data with realistic characteristics.

Nykter M, Aho T, Ahdesmäki M, Ruusuvuori P, Lehmussola A, Yli-Harja O. Nykter M, et al. BMC Bioinformatics. 2006 Jul 18;7:349. doi: 10.1186/1471-2105-7-349. BMC Bioinformatics. 2006. PMID: 16848902 Free PMC article.

4

Microarray simulator as educational tool.

Ruusuvuori P, Nykter M, Mäkiraatikka E, Lehmussola A, Korpelainen T, Erkkilä T, Yli-Harja O. Ruusuvuori P, et al. Among authors: nykter m. Annu Int Conf IEEE Eng Med Biol Soc. 2007;2007:5920-3. doi: 10.1109/IEMBS.2007.4353695. Annu Int Conf IEEE Eng Med Biol Soc. 2007. PMID: 18003361

5

Gene expression dynamics in the macrophage exhibit criticality.

Nykter M, Price ND, Aldana M, Ramsey SA, Kauffman SA, Hood LE, Yli-Harja O, Shmulevich I. Nykter M, et al. Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1897-900. doi: 10.1073/pnas.0711525105. Epub 2008 Feb 4. Proc Natl Acad Sci U S A. 2008. PMID: 18250330 Free PMC article.

6

Critical networks exhibit maximal information diversity in structure-dynamics relationships.

Nykter M, Price ND, Larjo A, Aho T, Kauffman SA, Yli-Harja O, Shmulevich I. Nykter M, et al. Phys Rev Lett. 2008 Feb 8;100(5):058702. doi: 10.1103/PhysRevLett.100.058702. Epub 2008 Feb 4. Phys Rev Lett. 2008. PMID: 18352443

7

Computational methods for estimation of cell cycle phase distributions of yeast cells.

Niemistö A, Nykter M, Aho T, Jalovaara H, Marjanen K, Ahdesmäki M, Ruusuvuori P, Tiainen M, Linne ML, Yli-Harja O. Niemistö A, et al. Among authors: nykter m. EURASIP J Bioinform Syst Biol. 2007;2007(1):46150. doi: 10.1155/2007/46150. EURASIP J Bioinform Syst Biol. 2007. PMID: 18354733 Free PMC article.

8

An integrated study of aberrant gene copy number and gene expression in GIST and LMS.

Yang D, Ylipaa A, Yang J, Hunt K, Pollock R, Trent J, Yli-Harja O, Shmulevich I, Nykter M, Zhang W. Yang D, et al. Among authors: nykter m. Technol Cancer Res Treat. 2010 Apr;9(2):171-8. doi: 10.1177/153303461000900206. Technol Cancer Res Treat. 2010. PMID: 20218739 Free article.

9

Integrative genomic characterization and a genomic staging system for gastrointestinal stromal tumors.

Ylipää A, Hunt KK, Yang J, Lazar AJ, Torres KE, Lev DC, Nykter M, Pollock RE, Trent J, Zhang W. Ylipää A, et al. Among authors: nykter m. Cancer. 2011 Jan 15;117(2):380-9. doi: 10.1002/cncr.25594. Epub 2010 Sep 3. Cancer. 2011. PMID: 20818650 Free PMC article.

10

A systems biological approach to identify key transcription factors and their genomic neighborhoods in human sarcomas.

Ylipää A, Yli-Harja O, Zhang W, Nykter M. Ylipää A, et al. Among authors: nykter m. Chin J Cancer. 2011 Jan;30(1):27-40. doi: 10.5732/cjc.010.10541. Chin J Cancer. 2011. PMID: 21192842 Free PMC article.

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