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Visualizing biological data-now and in the future.
O'Donoghue SI, Gavin AC, Gehlenborg N, Goodsell DS, Hériché JK, Nielsen CB, North C, Olson AJ, Procter JB, Shattuck DW, Walter T, Wong B. O'Donoghue SI, et al. Nat Methods. 2010 Mar;7(3 Suppl):S2-4. doi: 10.1038/nmeth.f.301. Nat Methods. 2010. PMID: 20195254
Visualization of macromolecular structures.
O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA, Nilges M, Saibil HR, Schafferhans A, Wade RC, Westhof E, Olson AJ. O'Donoghue SI, et al. Nat Methods. 2010 Mar;7(3 Suppl):S42-55. doi: 10.1038/nmeth.1427. Epub 2010 Mar 1. Nat Methods. 2010. PMID: 20195256 Free PMC article. Review.
Visualization of omics data for systems biology.
Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin AC. Gehlenborg N, et al. Nat Methods. 2010 Mar;7(3 Suppl):S56-68. doi: 10.1038/nmeth.1436. Nat Methods. 2010. PMID: 20195258 Review.
Arena3D: visualization of biological networks in 3D.
Pavlopoulos GA, O'Donoghue SI, Satagopam VP, Soldatos TG, Pafilis E, Schneider R. Pavlopoulos GA, et al. BMC Syst Biol. 2008 Nov 28;2:104. doi: 10.1186/1752-0509-2-104. BMC Syst Biol. 2008. PMID: 19040715 Free PMC article.
Caipirini: using gene sets to rank literature.
Soldatos TG, O'Donoghue SI, Satagopam VP, Barbosa-Silva A, Pavlopoulos GA, Wanderley-Nogueira AC, Soares-Cavalcanti NM, Schneider R. Soldatos TG, et al. BioData Min. 2012 Feb 1;5(1):1. doi: 10.1186/1756-0381-5-1. BioData Min. 2012. PMID: 22297131 Free PMC article.
Visualization and Analysis of Epiproteome Dynamics.
Kaur S, Baldi B, Vuong J, O'Donoghue SI. Kaur S, et al. Among authors: o donoghue si. J Mol Biol. 2019 Apr 5;431(8):1519-1539. doi: 10.1016/j.jmb.2019.01.044. Epub 2019 Feb 13. J Mol Biol. 2019. PMID: 30769119 Review.
60 results