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COXPRESdb: a database to compare gene coexpression in seven model animals.
Obayashi T, Kinoshita K. Obayashi T, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D1016-22. doi: 10.1093/nar/gkq1147. Epub 2010 Nov 16. Nucleic Acids Res. 2011. PMID: 21081562 Free PMC article.
Editorial: Plant and Cell Physiology's 2017 Database Issue.
Ohyanagi H, Obayashi T, Yano K. Ohyanagi H, et al. Among authors: obayashi t. Plant Cell Physiol. 2017 Jan 1;58(1):1-3. doi: 10.1093/pcp/pcw227. Plant Cell Physiol. 2017. PMID: 28158372 No abstract available.
Plant and cell physiology 2014 online database issue.
Obayashi T, Yano K. Obayashi T, et al. Plant Cell Physiol. 2014 Jan;55(1):1-2. doi: 10.1093/pcp/pct193. Plant Cell Physiol. 2014. PMID: 24415768 No abstract available.
ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants.
Obayashi T, Nishida K, Kasahara K, Kinoshita K. Obayashi T, et al. Plant Cell Physiol. 2011 Feb;52(2):213-9. doi: 10.1093/pcp/pcq203. Epub 2011 Jan 7. Plant Cell Physiol. 2011. PMID: 21217125 Free PMC article.
Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules.
Okamura Y, Obayashi T, Kinoshita K. Okamura Y, et al. Among authors: obayashi t. PLoS One. 2015 Jul 6;10(7):e0132039. doi: 10.1371/journal.pone.0132039. eCollection 2015. PLoS One. 2015. PMID: 26147120 Free PMC article.
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.
Okamura Y, Aoki Y, Obayashi T, Tadaka S, Ito S, Narise T, Kinoshita K. Okamura Y, et al. Among authors: obayashi t. Nucleic Acids Res. 2015 Jan;43(Database issue):D82-6. doi: 10.1093/nar/gku1163. Epub 2014 Nov 11. Nucleic Acids Res. 2015. PMID: 25392420 Free PMC article.
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.
Obayashi T, Okamura Y, Ito S, Tadaka S, Aoki Y, Shirota M, Kinoshita K. Obayashi T, et al. Plant Cell Physiol. 2014 Jan;55(1):e6. doi: 10.1093/pcp/pct178. Epub 2013 Dec 10. Plant Cell Physiol. 2014. PMID: 24334350 Free PMC article.
COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference.
Obayashi T, Kagaya Y, Aoki Y, Tadaka S, Kinoshita K. Obayashi T, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D55-D62. doi: 10.1093/nar/gky1155. Nucleic Acids Res. 2019. PMID: 30462320 Free PMC article.
Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression.
Obayashi T, Kinoshita K. Obayashi T, et al. DNA Res. 2009 Oct;16(5):249-60. doi: 10.1093/dnares/dsp016. Epub 2009 Sep 18. DNA Res. 2009. PMID: 19767600 Free PMC article.
COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.
Obayashi T, Okamura Y, Ito S, Tadaka S, Motoike IN, Kinoshita K. Obayashi T, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D1014-20. doi: 10.1093/nar/gks1014. Epub 2012 Nov 29. Nucleic Acids Res. 2013. PMID: 23203868 Free PMC article.
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