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High thermodynamic stability of parametrically designed helical bundles.
Huang PS, Oberdorfer G, Xu C, Pei XY, Nannenga BL, Rogers JM, DiMaio F, Gonen T, Luisi B, Baker D. Huang PS, et al. Among authors: oberdorfer g. Science. 2014 Oct 24;346(6208):481-485. doi: 10.1126/science.1257481. Science. 2014. PMID: 25342806 Free PMC article.
Computational design of a homotrimeric metalloprotein with a trisbipyridyl core.
Mills JH, Sheffler W, Ener ME, Almhjell PJ, Oberdorfer G, Pereira JH, Parmeggiani F, Sankaran B, Zwart PH, Baker D. Mills JH, et al. Among authors: oberdorfer g. Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15012-15017. doi: 10.1073/pnas.1600188113. Epub 2016 Dec 8. Proc Natl Acad Sci U S A. 2016. PMID: 27940918 Free PMC article.
De novo design of a homo-trimeric amantadine-binding protein.
Park J, Selvaraj B, McShan AC, Boyken SE, Wei KY, Oberdorfer G, DeGrado W, Sgourakis NG, Cuneo MJ, Myles DA, Baker D. Park J, et al. Among authors: oberdorfer g. Elife. 2019 Dec 19;8:e47839. doi: 10.7554/eLife.47839. Elife. 2019. PMID: 31854299 Free PMC article.
Principles for designing proteins with cavities formed by curved β sheets.
Marcos E, Basanta B, Chidyausiku TM, Tang Y, Oberdorfer G, Liu G, Swapna GV, Guan R, Silva DA, Dou J, Pereira JH, Xiao R, Sankaran B, Zwart PH, Montelione GT, Baker D. Marcos E, et al. Among authors: oberdorfer g. Science. 2017 Jan 13;355(6321):201-206. doi: 10.1126/science.aah7389. Science. 2017. PMID: 28082595 Free PMC article.
De novo design of a non-local β-sheet protein with high stability and accuracy.
Marcos E, Chidyausiku TM, McShan AC, Evangelidis T, Nerli S, Carter L, Nivón LG, Davis A, Oberdorfer G, Tripsianes K, Sgourakis NG, Baker D. Marcos E, et al. Among authors: oberdorfer g. Nat Struct Mol Biol. 2018 Nov;25(11):1028-1034. doi: 10.1038/s41594-018-0141-6. Epub 2018 Oct 29. Nat Struct Mol Biol. 2018. PMID: 30374087 Free PMC article.
Improved molecular replacement by density- and energy-guided protein structure optimization.
DiMaio F, Terwilliger TC, Read RJ, Wlodawer A, Oberdorfer G, Wagner U, Valkov E, Alon A, Fass D, Axelrod HL, Das D, Vorobiev SM, Iwaï H, Pokkuluri PR, Baker D. DiMaio F, et al. Among authors: oberdorfer g. Nature. 2011 May 26;473(7348):540-3. doi: 10.1038/nature09964. Epub 2011 May 1. Nature. 2011. PMID: 21532589 Free PMC article.
De novo design of self-assembling helical protein filaments.
Shen H, Fallas JA, Lynch E, Sheffler W, Parry B, Jannetty N, Decarreau J, Wagenbach M, Vicente JJ, Chen J, Wang L, Dowling Q, Oberdorfer G, Stewart L, Wordeman L, De Yoreo J, Jacobs-Wagner C, Kollman J, Baker D. Shen H, et al. Among authors: oberdorfer g. Science. 2018 Nov 9;362(6415):705-709. doi: 10.1126/science.aau3775. Science. 2018. PMID: 30409885 Free PMC article.
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