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PathwAX: a web server for network crosstalk based pathway annotation.
Ogris C, Helleday T, Sonnhammer EL. Ogris C, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W105-9. doi: 10.1093/nar/gkw356. Epub 2016 May 5. Nucleic Acids Res. 2016. PMID: 27151197 Free PMC article.
Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity.
Berglund E, Maaskola J, Schultz N, Friedrich S, Marklund M, Bergenstråhle J, Tarish F, Tanoglidi A, Vickovic S, Larsson L, Salmén F, Ogris C, Wallenborg K, Lagergren J, Ståhl P, Sonnhammer E, Helleday T, Lundeberg J. Berglund E, et al. Among authors: ogris c. Nat Commun. 2018 Jun 20;9(1):2419. doi: 10.1038/s41467-018-04724-5. Nat Commun. 2018. PMID: 29925878 Free PMC article.
FunCoup 4: new species, data, and visualization.
Ogris C, Guala D, Sonnhammer ELL. Ogris C, et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D601-D607. doi: 10.1093/nar/gkx1138. Nucleic Acids Res. 2018. PMID: 29165593 Free PMC article.
A novel method for crosstalk analysis of biological networks: improving accuracy of pathway annotation.
Ogris C, Guala D, Helleday T, Sonnhammer EL. Ogris C, et al. Nucleic Acids Res. 2017 Jan 25;45(2):e8. doi: 10.1093/nar/gkw849. Epub 2016 Sep 22. Nucleic Acids Res. 2017. PMID: 27664219 Free PMC article.
FunCoup 3.0: database of genome-wide functional coupling networks.
Schmitt T, Ogris C, Sonnhammer EL. Schmitt T, et al. Among authors: ogris c. Nucleic Acids Res. 2014 Jan;42(Database issue):D380-8. doi: 10.1093/nar/gkt984. Epub 2013 Oct 31. Nucleic Acids Res. 2014. PMID: 24185702 Free PMC article.
Genome-wide functional association networks: background, data & state-of-the-art resources.
Guala D, Ogris C, Müller N, Sonnhammer ELL. Guala D, et al. Among authors: ogris c. Brief Bioinform. 2020 Jul 15;21(4):1224-1237. doi: 10.1093/bib/bbz064. Brief Bioinform. 2020. PMID: 31281921 Free PMC article.
Synthetic lethality between androgen receptor signalling and the PARP pathway in prostate cancer.
Asim M, Tarish F, Zecchini HI, Sanjiv K, Gelali E, Massie CE, Baridi A, Warren AY, Zhao W, Ogris C, McDuffus LA, Mascalchi P, Shaw G, Dev H, Wadhwa K, Wijnhoven P, Forment JV, Lyons SR, Lynch AG, O'Neill C, Zecchini VR, Rennie PS, Baniahmad A, Tavaré S, Mills IG, Galanty Y, Crosetto N, Schultz N, Neal D, Helleday T. Asim M, et al. Among authors: ogris c. Nat Commun. 2017 Aug 29;8(1):374. doi: 10.1038/s41467-017-00393-y. Nat Commun. 2017. PMID: 28851861 Free PMC article.
Lck mediates signal transmission from CD59 to the TCR/CD3 pathway in Jurkat T cells.
Lipp AM, Juhasz K, Paar C, Ogris C, Eckerstorfer P, Thuenauer R, Hesse J, Nimmervoll B, Stockinger H, Schütz GJ, Bodenhofer U, Balogi Z, Sonnleitner A. Lipp AM, et al. Among authors: ogris c. PLoS One. 2014 Jan 15;9(1):e85934. doi: 10.1371/journal.pone.0085934. eCollection 2014. PLoS One. 2014. PMID: 24454946 Free PMC article.