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A DNA hypermethylation module for the stem/progenitor cell signature of cancer.
Easwaran H, Johnstone SE, Van Neste L, Ohm J, Mosbruger T, Wang Q, Aryee MJ, Joyce P, Ahuja N, Weisenberger D, Collisson E, Zhu J, Yegnasubramanian S, Matsui W, Baylin SB. Easwaran H, et al. Genome Res. 2012 May;22(5):837-49. doi: 10.1101/gr.131169.111. Epub 2012 Mar 5. Genome Res. 2012. PMID: 22391556 Free PMC article.
Polycomb CBX7 promotes initiation of heritable repression of genes frequently silenced with cancer-specific DNA hypermethylation.
Mohammad HP, Cai Y, McGarvey KM, Easwaran H, Van Neste L, Ohm JE, O'Hagan HM, Baylin SB. Mohammad HP, et al. Cancer Res. 2009 Aug 1;69(15):6322-30. doi: 10.1158/0008-5472.CAN-09-0065. Epub 2009 Jul 14. Cancer Res. 2009. PMID: 19602592 Free PMC article.
PcG proteins, DNA methylation, and gene repression by chromatin looping.
Tiwari VK, McGarvey KM, Licchesi JD, Ohm JE, Herman JG, Schübeler D, Baylin SB. Tiwari VK, et al. PLoS Biol. 2008 Dec 2;6(12):2911-27. doi: 10.1371/journal.pbio.0060306. PLoS Biol. 2008. PMID: 19053175 Free PMC article.
Abnormal DNA methylation of CD133 in colorectal and glioblastoma tumors.
Yi JM, Tsai HC, Glöckner SC, Lin S, Ohm JE, Easwaran H, James CD, Costello JF, Riggins G, Eberhart CG, Laterra J, Vescovi AL, Ahuja N, Herman JG, Schuebel KE, Baylin SB. Yi JM, et al. Cancer Res. 2008 Oct 1;68(19):8094-103. doi: 10.1158/0008-5472.CAN-07-6208. Cancer Res. 2008. PMID: 18829568 Free PMC article.
Defining a chromatin pattern that characterizes DNA-hypermethylated genes in colon cancer cells.
McGarvey KM, Van Neste L, Cope L, Ohm JE, Herman JG, Van Criekinge W, Schuebel KE, Baylin SB. McGarvey KM, et al. Cancer Res. 2008 Jul 15;68(14):5753-9. doi: 10.1158/0008-5472.CAN-08-0700. Cancer Res. 2008. PMID: 18632628 Free PMC article.
A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations.
Tiwari VK, Cope L, McGarvey KM, Ohm JE, Baylin SB. Tiwari VK, et al. Genome Res. 2008 Jul;18(7):1171-9. doi: 10.1101/gr.073452.107. Epub 2008 May 23. Genome Res. 2008. PMID: 18502945 Free PMC article.
Stem cell chromatin patterns: an instructive mechanism for DNA hypermethylation?
Ohm JE, Baylin SB. Ohm JE, et al. Cell Cycle. 2007 May 2;6(9):1040-3. doi: 10.4161/cc.6.9.4210. Epub 2007 May 28. Cell Cycle. 2007. PMID: 17457052 Free PMC article. Review.
A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing.
Ohm JE, McGarvey KM, Yu X, Cheng L, Schuebel KE, Cope L, Mohammad HP, Chen W, Daniel VC, Yu W, Berman DM, Jenuwein T, Pruitt K, Sharkis SJ, Watkins DN, Herman JG, Baylin SB. Ohm JE, et al. Nat Genet. 2007 Feb;39(2):237-42. doi: 10.1038/ng1972. Epub 2007 Jan 9. Nat Genet. 2007. PMID: 17211412 Free PMC article.
Inhibition of SIRT1 reactivates silenced cancer genes without loss of promoter DNA hypermethylation.
Pruitt K, Zinn RL, Ohm JE, McGarvey KM, Kang SH, Watkins DN, Herman JG, Baylin SB. Pruitt K, et al. PLoS Genet. 2006 Mar;2(3):e40. doi: 10.1371/journal.pgen.0020040. Epub 2006 Mar 31. PLoS Genet. 2006. PMID: 16596166 Free PMC article.
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