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CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.
Fujisawa T, Okamoto S, Katayama T, Nakao M, Yoshimura H, Kajiya-Kanegae H, Yamamoto S, Yano C, Yanaka Y, Maita H, Kaneko T, Tabata S, Nakamura Y. Fujisawa T, et al. Among authors: okamoto s. Nucleic Acids Res. 2014 Jan;42(Database issue):D666-70. doi: 10.1093/nar/gkt1145. Epub 2013 Nov 25. Nucleic Acids Res. 2014. PMID: 24275496 Free PMC article.
CyanoBase: the cyanobacteria genome database update 2010.
Nakao M, Okamoto S, Kohara M, Fujishiro T, Fujisawa T, Sato S, Tabata S, Kaneko T, Nakamura Y. Nakao M, et al. Among authors: okamoto s. Nucleic Acids Res. 2010 Jan;38(Database issue):D379-81. doi: 10.1093/nar/gkp915. Epub 2009 Oct 30. Nucleic Acids Res. 2010. PMID: 19880388 Free PMC article.
TogoGenome/TogoStanza: modularized Semantic Web genome database.
Katayama T, Kawashima S, Okamoto S, Moriya Y, Chiba H, Naito Y, Fujisawa T, Mori H, Takagi T. Katayama T, et al. Among authors: okamoto s. Database (Oxford). 2019 Jan 1;2019:bay132. doi: 10.1093/database/bay132. Database (Oxford). 2019. PMID: 30624651 Free PMC article.
Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark.
Hiraide Y, Oshima K, Fujisawa T, Uesaka K, Hirose Y, Tsujimoto R, Yamamoto H, Okamoto S, Nakamura Y, Terauchi K, Omata T, Ihara K, Hattori M, Fujita Y. Hiraide Y, et al. Among authors: okamoto s. Plant Cell Physiol. 2015 Feb;56(2):334-45. doi: 10.1093/pcp/pcu165. Epub 2014 Nov 20. Plant Cell Physiol. 2015. PMID: 25416288
Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs.
Okubo T, Tsukui T, Maita H, Okamoto S, Oshima K, Fujisawa T, Saito A, Futamata H, Hattori R, Shimomura Y, Haruta S, Morimoto S, Wang Y, Sakai Y, Hattori M, Aizawa S, Nagashima KV, Masuda S, Hattori T, Yamashita A, Bao Z, Hayatsu M, Kajiya-Kanegae H, Yoshinaga I, Sakamoto K, Toyota K, Nakao M, Kohara M, Anda M, Niwa R, Jung-Hwan P, Sameshima-Saito R, Tokuda S, Yamamoto S, Yamamoto S, Yokoyama T, Akutsu T, Nakamura Y, Nakahira-Yanaka Y, Takada Hoshino Y, Hirakawa H, Mitsui H, Terasawa K, Itakura M, Sato S, Ikeda-Ohtsubo W, Sakakura N, Kaminuma E, Minamisawa K. Okubo T, et al. Among authors: okamoto s. Microbes Environ. 2012;27(3):306-15. doi: 10.1264/jsme2.me11321. Epub 2012 Mar 28. Microbes Environ. 2012. PMID: 22452844 Free PMC article.
Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843.
Kaneko T, Nakajima N, Okamoto S, Suzuki I, Tanabe Y, Tamaoki M, Nakamura Y, Kasai F, Watanabe A, Kawashima K, Kishida Y, Ono A, Shimizu Y, Takahashi C, Minami C, Fujishiro T, Kohara M, Katoh M, Nakazaki N, Nakayama S, Yamada M, Tabata S, Watanabe MM. Kaneko T, et al. Among authors: okamoto s. DNA Res. 2007 Dec 31;14(6):247-56. doi: 10.1093/dnares/dsm026. Epub 2008 Jan 11. DNA Res. 2007. PMID: 18192279 Free PMC article.
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
Katayama T, Wilkinson MD, Vos R, Kawashima T, Kawashima S, Nakao M, Yamamoto Y, Chun HW, Yamaguchi A, Kawano S, Aerts J, Aoki-Kinoshita KF, Arakawa K, Aranda B, Bonnal RJ, Fernández JM, Fujisawa T, Gordon PM, Goto N, Haider S, Harris T, Hatakeyama T, Ho I, Itoh M, Kasprzyk A, Kido N, Kim YJ, Kinjo AR, Konishi F, Kovarskaya Y, von Kuster G, Labarga A, Limviphuvadh V, McCarthy L, Nakamura Y, Nam Y, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Oinn T, Okamoto S, Okuda S, Ono K, Oshita K, Park KJ, Putnam N, Senger M, Severin J, Shigemoto Y, Sugawara H, Taylor J, Trelles O, Yamasaki C, Yamashita R, Satoh N, Takagi T. Katayama T, et al. Among authors: okamoto s. J Biomed Semantics. 2011 Aug 2;2:4. doi: 10.1186/2041-1480-2-4. J Biomed Semantics. 2011. PMID: 21806842 Free PMC article.
Implementation of linked data in the life sciences at BioHackathon 2011.
Aoki-Kinoshita KF, Kinjo AR, Morita M, Igarashi Y, Chen YA, Shigemoto Y, Fujisawa T, Akune Y, Katoda T, Kokubu A, Mori T, Nakao M, Kawashima S, Okamoto S, Katayama T, Ogishima S. Aoki-Kinoshita KF, et al. Among authors: okamoto s. J Biomed Semantics. 2015 Jan 7;6:3. doi: 10.1186/2041-1480-6-3. eCollection 2015. J Biomed Semantics. 2015. PMID: 25973165 Free PMC article. Review.
Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.
Fujisawa T, Narikawa R, Okamoto S, Ehira S, Yoshimura H, Suzuki I, Masuda T, Mochimaru M, Takaichi S, Awai K, Sekine M, Horikawa H, Yashiro I, Omata S, Takarada H, Katano Y, Kosugi H, Tanikawa S, Ohmori K, Sato N, Ikeuchi M, Fujita N, Ohmori M. Fujisawa T, et al. Among authors: okamoto s. DNA Res. 2010 Apr;17(2):85-103. doi: 10.1093/dnares/dsq004. Epub 2010 Mar 4. DNA Res. 2010. PMID: 20203057 Free PMC article.
Use of segment-based microarray in the analysis of global gene expression in response to various environmental stresses in the cyanobacterium Anabaena sp. PCC 7120.
Sato N, Ohmori M, Ikeuchi M, Tashiro K, Wolk CP, Kaneko T, Okada K, Tsuzuki M, Ehira S, Katoh H, Okamoto S, Yoshimura H, Fujisawa T, Kamei A, Yoshihara S, Narikawa R, Hamano T, Tabata S, Kuhara S. Sato N, et al. Among authors: okamoto s. J Gen Appl Microbiol. 2004 Feb;50(1):1-8. doi: 10.2323/jgam.50.1. J Gen Appl Microbiol. 2004. PMID: 15057705 Free article.
3,072 results