Okoniewski MJ - Search Results

1

X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis.

Yates T, Okoniewski MJ, Miller CJ. Yates T, et al. Among authors: okoniewski mj. Nucleic Acids Res. 2008 Jan;36(Database issue):D780-6. doi: 10.1093/nar/gkm779. Epub 2007 Oct 11. Nucleic Acids Res. 2008. PMID: 17932061 Free PMC article.

2

Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations.

Okoniewski MJ, Miller CJ. Okoniewski MJ, et al. BMC Bioinformatics. 2006 Jun 2;7:276. doi: 10.1186/1471-2105-7-276. BMC Bioinformatics. 2006. PMID: 16749918 Free PMC article.

3

High correspondence between Affymetrix exon and standard expression arrays.

Okoniewski MJ, Hey Y, Pepper SD, Miller CJ. Okoniewski MJ, et al. Biotechniques. 2007 Feb;42(2):181-5. doi: 10.2144/000112315. Biotechniques. 2007. PMID: 17373482 Free article.

4

An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data.

Okoniewski MJ, Yates T, Dibben S, Miller CJ. Okoniewski MJ, et al. Genome Biol. 2007;8(5):R79. doi: 10.1186/gb-2007-8-5-r79. Genome Biol. 2007. PMID: 17498294 Free PMC article.

5

Exon level integration of proteomics and microarray data.

Bitton DA, Okoniewski MJ, Connolly Y, Miller CJ. Bitton DA, et al. Among authors: okoniewski mj. BMC Bioinformatics. 2008 Feb 25;9:118. doi: 10.1186/1471-2105-9-118. BMC Bioinformatics. 2008. PMID: 18298841 Free PMC article.

6

Comprehensive analysis of affymetrix exon arrays using BioConductor.

Okoniewski MJ, Miller CJ. Okoniewski MJ, et al. PLoS Comput Biol. 2008 Feb;4(2):e6. doi: 10.1371/journal.pcbi.0040006. PLoS Comput Biol. 2008. PMID: 18463711 Free PMC article. Review. No abstract available.

7

Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinases.

Pierce A, Unwin RD, Evans CA, Griffiths S, Carney L, Zhang L, Jaworska E, Lee CF, Blinco D, Okoniewski MJ, Miller CJ, Bitton DA, Spooncer E, Whetton AD. Pierce A, et al. Among authors: okoniewski mj. Mol Cell Proteomics. 2008 May;7(5):853-63. doi: 10.1074/mcp.M700251-MCP200. Epub 2007 Oct 21. Mol Cell Proteomics. 2008. PMID: 17951628 Free article.

8

The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis.

Sims AH, Smethurst GJ, Hey Y, Okoniewski MJ, Pepper SD, Howell A, Miller CJ, Clarke RB. Sims AH, et al. Among authors: okoniewski mj. BMC Med Genomics. 2008 Sep 21;1:42. doi: 10.1186/1755-8794-1-42. BMC Med Genomics. 2008. PMID: 18803878 Free PMC article.

9

Preferred analysis methods for single genomic regions in RNA sequencing revealed by processing the shape of coverage.

Okoniewski MJ, Leśniewska A, Szabelska A, Zyprych-Walczak J, Ryan M, Wachtel M, Morzy T, Schäfer B, Schlapbach R. Okoniewski MJ, et al. Nucleic Acids Res. 2012 May;40(9):e63. doi: 10.1093/nar/gkr1249. Epub 2011 Dec 30. Nucleic Acids Res. 2012. PMID: 22210855 Free PMC article.

10

rnaSeqMap: a Bioconductor package for RNA sequencing data exploration.

Leśniewska A, Okoniewski MJ. Leśniewska A, et al. Among authors: okoniewski mj. BMC Bioinformatics. 2011 May 25;12:200. doi: 10.1186/1471-2105-12-200. BMC Bioinformatics. 2011. PMID: 21612622 Free PMC article.

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