Oliva B - Search Results

1

An ensemble learning approach for modeling the systems biology of drug-induced injury.

Aguirre-Plans J, Piñero J, Souza T, Callegaro G, Kunnen SJ, Sanz F, Fernandez-Fuentes N, Furlong LI, Guney E, Oliva B. Aguirre-Plans J, et al. Among authors: oliva b. Biol Direct. 2021 Jan 12;16(1):5. doi: 10.1186/s13062-020-00288-x. Biol Direct. 2021. PMID: 33435983 Free PMC article.

2

Biana: a software framework for compiling biological interactions and analyzing networks.

Garcia-Garcia J, Guney E, Aragues R, Planas-Iglesias J, Oliva B. Garcia-Garcia J, et al. Among authors: oliva b. BMC Bioinformatics. 2010 Jan 27;11:56. doi: 10.1186/1471-2105-11-56. BMC Bioinformatics. 2010. PMID: 20105306 Free PMC article.

3

Extending signaling pathways with protein-interaction networks. Application to apoptosis.

Planas-Iglesias J, Guney E, García-García J, Robertson KA, Raza S, Freeman TC, Ghazal P, Oliva B. Planas-Iglesias J, et al. Among authors: oliva b. OMICS. 2012 May;16(5):245-56. doi: 10.1089/omi.2011.0130. Epub 2012 Mar 2. OMICS. 2012. PMID: 22385281

4

Exploiting protein-protein interaction networks for genome-wide disease-gene prioritization.

Guney E, Oliva B. Guney E, et al. Among authors: oliva b. PLoS One. 2012;7(9):e43557. doi: 10.1371/journal.pone.0043557. Epub 2012 Sep 21. PLoS One. 2012. PMID: 23028459 Free PMC article.

5

ArchDB 2014: structural classification of loops in proteins.

Bonet J, Planas-Iglesias J, Garcia-Garcia J, Marín-López MA, Fernandez-Fuentes N, Oliva B. Bonet J, et al. Among authors: oliva b. Nucleic Acids Res. 2014 Jan;42(Database issue):D315-9. doi: 10.1093/nar/gkt1189. Epub 2013 Nov 21. Nucleic Acids Res. 2014. PMID: 24265221 Free PMC article.

6

GUILDify: a web server for phenotypic characterization of genes through biological data integration and network-based prioritization algorithms.

Guney E, Garcia-Garcia J, Oliva B. Guney E, et al. Among authors: oliva b. Bioinformatics. 2014 Jun 15;30(12):1789-90. doi: 10.1093/bioinformatics/btu092. Epub 2014 Feb 14. Bioinformatics. 2014. PMID: 24532728

7

Analysis of the robustness of network-based disease-gene prioritization methods reveals redundancy in the human interactome and functional diversity of disease-genes.

Guney E, Oliva B. Guney E, et al. Among authors: oliva b. PLoS One. 2014 Apr 14;9(4):e94686. doi: 10.1371/journal.pone.0094686. eCollection 2014. PLoS One. 2014. PMID: 24733074 Free PMC article.

8

Knowledge-based modeling of peptides at protein interfaces: PiPreD.

Oliva B, Fernandez-Fuentes N. Oliva B, et al. Bioinformatics. 2015 May 1;31(9):1405-10. doi: 10.1093/bioinformatics/btu838. Epub 2014 Dec 23. Bioinformatics. 2015. PMID: 25540186

9

VORFFIP-driven dock: V-D2OCK, a fast and accurate protein docking strategy.

Segura J, Marín-López MA, Jones PF, Oliva B, Fernandez-Fuentes N. Segura J, et al. Among authors: oliva b. PLoS One. 2015 Mar 12;10(3):e0118107. doi: 10.1371/journal.pone.0118107. eCollection 2015. PLoS One. 2015. PMID: 25763838 Free PMC article.

10

FN14 and GRP94 expression are prognostic/predictive biomarkers of brain metastasis outcome that open up new therapeutic strategies.

Martínez-Aranda A, Hernández V, Guney E, Muixí L, Foj R, Baixeras N, Cuadras D, Moreno V, Urruticoechea A, Gil M, Oliva B, Moreno F, González-Suarez E, Vidal N, Andreu X, Seguí MA, Ballester R, Castella E, Sierra A. Martínez-Aranda A, et al. Among authors: oliva b. Oncotarget. 2015 Dec 29;6(42):44254-73. doi: 10.18632/oncotarget.5471. Oncotarget. 2015. PMID: 26497551 Free PMC article.

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