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Conceptual modelling of genomic information.
Paton NW, Khan SA, Hayes A, Moussouni F, Brass A, Eilbeck K, Goble CA, Hubbard SJ, Oliver SG. Paton NW, et al. Bioinformatics. 2000 Jun;16(6):548-57. doi: 10.1093/bioinformatics/16.6.548. Bioinformatics. 2000. PMID: 10980152
One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity.
Amoutzias GD, Veron AS, Weiner J 3rd, Robinson-Rechavi M, Bornberg-Bauer E, Oliver SG, Robertson DL. Amoutzias GD, et al. Mol Biol Evol. 2007 Mar;24(3):827-35. doi: 10.1093/molbev/msl211. Epub 2006 Dec 28. Mol Biol Evol. 2007. PMID: 17194801
Bioinformatic assessment of mass spectrometric chemical derivatisation techniques for proteome database searching.
Sidhu KS, Sangvanich P, Brancia FL, Sullivan AG, Gaskell SJ, Wolkenhaue O, Oliver SG, Hubbard SJ. Sidhu KS, et al. Proteomics. 2001 Nov;1(11):1368-77. doi: 10.1002/1615-9861(200111)1:11<1368::AID-PROT1368>3.0.CO;2-U. Proteomics. 2001. PMID: 11922597
A combination of chemical derivatisation and improved bioinformatic tools optimises protein identification for proteomics.
Brancia FL, Butt A, Beynon RJ, Hubbard SJ, Gaskell SJ, Oliver SG. Brancia FL, et al. Electrophoresis. 2001 Feb;22(3):552-9. doi: 10.1002/1522-2683(200102)22:3<552::AID-ELPS552>3.0.CO;2-C. Electrophoresis. 2001. PMID: 11258768
Information management for high content live cell imaging.
Jameson D, Turner DA, Ankers J, Kennedy S, Ryan S, Swainston N, Griffiths T, Spiller DG, Oliver SG, White MR, Kell DB, Paton NW. Jameson D, et al. BMC Bioinformatics. 2009 Jul 21;10:226. doi: 10.1186/1471-2105-10-226. BMC Bioinformatics. 2009. PMID: 19622144 Free PMC article.
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.
Li P, Castrillo JI, Velarde G, Wassink I, Soiland-Reyes S, Owen S, Withers D, Oinn T, Pocock MR, Goble CA, Oliver SG, Kell DB. Li P, et al. BMC Bioinformatics. 2008 Aug 7;9:334. doi: 10.1186/1471-2105-9-334. BMC Bioinformatics. 2008. PMID: 18687127 Free PMC article.
Data capture in bioinformatics: requirements and experiences with Pedro.
Jameson D, Garwood K, Garwood C, Booth T, Alper P, Oliver SG, Paton NW. Jameson D, et al. BMC Bioinformatics. 2008 Apr 10;9:183. doi: 10.1186/1471-2105-9-183. BMC Bioinformatics. 2008. PMID: 18402673 Free PMC article.
e-Fungi: a data resource for comparative analysis of fungal genomes.
Hedeler C, Wong HM, Cornell MJ, Alam I, Soanes DM, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG, Paton NW. Hedeler C, et al. BMC Genomics. 2007 Nov 20;8:426. doi: 10.1186/1471-2164-8-426. BMC Genomics. 2007. PMID: 18028535 Free PMC article.
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it.
Garwood K, Garwood C, Hedeler C, Griffiths T, Swainston N, Oliver SG, Paton NW. Garwood K, et al. BMC Bioinformatics. 2006 Dec 14;7:532. doi: 10.1186/1471-2105-7-532. BMC Bioinformatics. 2006. PMID: 17169146 Free PMC article.
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