Olm MR - Search Results

1

Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants.

Crits-Christoph A, Kantor RS, Olm MR, Whitney ON, Al-Shayeb B, Lou YC, Flamholz A, Kennedy LC, Greenwald H, Hinkle A, Hetzel J, Spitzer S, Koble J, Tan A, Hyde F, Schroth G, Kuersten S, Banfield JF, Nelson KL. Crits-Christoph A, et al. Among authors: olm mr. mBio. 2021 Jan 19;12(1):e02703-20. doi: 10.1128/mBio.02703-20. mBio. 2021. PMID: 33468686 Free PMC article.

2

Measurement of bacterial replication rates in microbial communities.

Brown CT, Olm MR, Thomas BC, Banfield JF. Brown CT, et al. Among authors: olm mr. Nat Biotechnol. 2016 Dec;34(12):1256-1263. doi: 10.1038/nbt.3704. Epub 2016 Nov 7. Nat Biotechnol. 2016. PMID: 27819664 Free PMC article.

3

Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.

Olm MR, Brown CT, Brooks B, Firek B, Baker R, Burstein D, Soenjoyo K, Thomas BC, Morowitz M, Banfield JF. Olm MR, et al. Genome Res. 2017 Apr;27(4):601-612. doi: 10.1101/gr.213256.116. Epub 2017 Jan 10. Genome Res. 2017. PMID: 28073918 Free PMC article.

4

The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis.

Olm MR, Butterfield CN, Copeland A, Boles TC, Thomas BC, Banfield JF. Olm MR, et al. mBio. 2017 Feb 21;8(1):e01969-16. doi: 10.1128/mBio.01969-16. mBio. 2017. PMID: 28223457 Free PMC article.

5

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication.

Olm MR, Brown CT, Brooks B, Banfield JF. Olm MR, et al. ISME J. 2017 Dec;11(12):2864-2868. doi: 10.1038/ismej.2017.126. Epub 2017 Jul 25. ISME J. 2017. PMID: 28742071 Free PMC article.

6

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.

Brooks B, Olm MR, Firek BA, Baker R, Thomas BC, Morowitz MJ, Banfield JF. Brooks B, et al. Among authors: olm mr. Nat Commun. 2017 Nov 27;8(1):1814. doi: 10.1038/s41467-017-02018-w. Nat Commun. 2017. PMID: 29180750 Free PMC article.

7

Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome.

Rahman SF, Olm MR, Morowitz MJ, Banfield JF. Rahman SF, et al. Among authors: olm mr. mSystems. 2018 Jan 9;3(1):e00123-17. doi: 10.1128/mSystems.00123-17. eCollection 2018 Jan-Feb. mSystems. 2018. PMID: 29359195 Free PMC article.

8

Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles.

Brown CT, Xiong W, Olm MR, Thomas BC, Baker R, Firek B, Morowitz MJ, Hettich RL, Banfield JF. Brown CT, et al. Among authors: olm mr. mBio. 2018 Apr 10;9(2):e00441-18. doi: 10.1128/mBio.00441-18. mBio. 2018. PMID: 29636439 Free PMC article.

9

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.

Brooks B, Olm MR, Firek BA, Baker R, Geller-McGrath D, Reimer SR, Soenjoyo KR, Yip JS, Dahan D, Thomas BC, Morowitz MJ, Banfield JF. Brooks B, et al. Among authors: olm mr. Microbiome. 2018 Jun 20;6(1):112. doi: 10.1186/s40168-018-0493-5. Microbiome. 2018. PMID: 29925423 Free PMC article.

10

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.

Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, Banfield JF. Matheus Carnevali PB, et al. Among authors: olm mr. Nat Commun. 2019 Jan 28;10(1):463. doi: 10.1038/s41467-018-08246-y. Nat Commun. 2019. PMID: 30692531 Free PMC article.

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