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Analysis of large-scale sequencing of small RNAs.
Olson AJ, Brennecke J, Aravin AA, Hannon GJ, Sachidanandam R. Olson AJ, et al. Pac Symp Biocomput. 2008:126-36. doi: 10.1142/9789812776136_0014. Pac Symp Biocomput. 2008. PMID: 18229681
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.
Wang B, Tseng E, Regulski M, Clark TA, Hon T, Jiao Y, Lu Z, Olson A, Stein JC, Ware D. Wang B, et al. Nat Commun. 2016 Jun 24;7:11708. doi: 10.1038/ncomms11708. Nat Commun. 2016. PMID: 27339440 Free PMC article.
RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs.
Olson A, Sheth N, Lee JS, Hannon G, Sachidanandam R. Olson A, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D153-7. doi: 10.1093/nar/gkj051. Nucleic Acids Res. 2006. PMID: 16381835 Free PMC article.
GeneSeer: a sage for gene names and genomic resources.
Olson AJ, Tully T, Sachidanandam R. Olson AJ, et al. BMC Genomics. 2005 Sep 21;6:134. doi: 10.1186/1471-2164-6-134. BMC Genomics. 2005. PMID: 16176584 Free PMC article.
Features of 5'-splice-site efficiency derived from disease-causing mutations and comparative genomics.
Roca X, Olson AJ, Rao AR, Enerly E, Kristensen VN, Børresen-Dale AL, Andresen BS, Krainer AR, Sachidanandam R. Roca X, et al. Genome Res. 2008 Jan;18(1):77-87. doi: 10.1101/gr.6859308. Epub 2007 Nov 21. Genome Res. 2008. PMID: 18032726 Free PMC article.
Gramene 2013: comparative plant genomics resources.
Monaco MK, Stein J, Naithani S, Wei S, Dharmawardhana P, Kumari S, Amarasinghe V, Youens-Clark K, Thomason J, Preece J, Pasternak S, Olson A, Jiao Y, Lu Z, Bolser D, Kerhornou A, Staines D, Walts B, Wu G, D'Eustachio P, Haw R, Croft D, Kersey PJ, Stein L, Jaiswal P, Ware D. Monaco MK, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D1193-9. doi: 10.1093/nar/gkt1110. Epub 2013 Nov 11. Nucleic Acids Res. 2014. PMID: 24217918 Free PMC article.
Regulatory modules controlling maize inflorescence architecture.
Eveland AL, Goldshmidt A, Pautler M, Morohashi K, Liseron-Monfils C, Lewis MW, Kumari S, Hiraga S, Yang F, Unger-Wallace E, Olson A, Hake S, Vollbrecht E, Grotewold E, Ware D, Jackson D. Eveland AL, et al. Genome Res. 2014 Mar;24(3):431-43. doi: 10.1101/gr.166397.113. Epub 2013 Dec 4. Genome Res. 2014. PMID: 24307553 Free PMC article.
Gramene Database: Navigating Plant Comparative Genomics Resources.
Gupta P, Naithani S, Tello-Ruiz MK, Chougule K, D'Eustachio P, Fabregat A, Jiao Y, Keays M, Lee YK, Kumari S, Mulvaney J, Olson A, Preece J, Stein J, Wei S, Weiser J, Huerta L, Petryszak R, Kersey P, Stein LD, Ware D, Jaiswal P. Gupta P, et al. Curr Plant Biol. 2016 Nov;7-8:10-15. doi: 10.1016/j.cpb.2016.12.005. Curr Plant Biol. 2016. PMID: 28713666 Free PMC article.
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