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147 results
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A-form conformational motifs in ligand-bound DNA structures.
Lu XJ, Shakked Z, Olson WK. Lu XJ, et al. Among authors: olson wk. J Mol Biol. 2000 Jul 21;300(4):819-40. doi: 10.1006/jmbi.2000.3690. J Mol Biol. 2000. PMID: 10891271
Normal-Mode Analysis of Circular DNA at the Base-Pair Level. 2. Large-Scale Configurational Transformation of a Naturally Curved Molecule.
Matsumoto A, Tobias I, Olson WK. Matsumoto A, et al. Among authors: olson wk. J Chem Theory Comput. 2005 Jan;1(1):130-42. doi: 10.1021/ct049949s. J Chem Theory Comput. 2005. PMID: 26641124
Characterization of the geometry and topology of DNA pictured as a discrete collection of atoms.
Clauvelin N, Olson WK, Tobias I. Clauvelin N, et al. Among authors: olson wk. J Chem Theory Comput. 2012 Mar 13;8(3):1092-1107. doi: 10.1021/ct200657e. J Chem Theory Comput. 2012. PMID: 24791158 Free PMC article.
5-Methylation of cytosine in CG:CG base-pair steps: a physicochemical mechanism for the epigenetic control of DNA nanomechanics.
Yusufaly TI, Li Y, Olson WK. Yusufaly TI, et al. Among authors: olson wk. J Phys Chem B. 2013 Dec 27;117(51):16436-42. doi: 10.1021/jp409887t. Epub 2013 Dec 16. J Phys Chem B. 2013. PMID: 24313757 Free PMC article.
Working the kinks out of nucleosomal DNA.
Olson WK, Zhurkin VB. Olson WK, et al. Curr Opin Struct Biol. 2011 Jun;21(3):348-57. doi: 10.1016/j.sbi.2011.03.006. Epub 2011 Apr 7. Curr Opin Struct Biol. 2011. PMID: 21482100 Free PMC article. Review.
Feature extraction using molecular planes for fuzzy relational clustering of a flexible dopamine reuptake inhibitor.
Banerjee A, Misra M, Pai D, Shih LY, Woodley R, Lu XJ, Srinivasan AR, Olson WK, Davé RN, Venanzi CA. Banerjee A, et al. Among authors: olson wk. J Chem Inf Model. 2007 Nov-Dec;47(6):2216-27. doi: 10.1021/ci7001632. Epub 2007 Oct 30. J Chem Inf Model. 2007. PMID: 17967005
Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures.
Zheng G, Lu XJ, Olson WK. Zheng G, et al. Among authors: olson wk. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W240-6. doi: 10.1093/nar/gkp358. Epub 2009 May 27. Nucleic Acids Res. 2009. PMID: 19474339 Free PMC article.
DNA topology confers sequence specificity to nonspecific architectural proteins.
Wei J, Czapla L, Grosner MA, Swigon D, Olson WK. Wei J, et al. Among authors: olson wk. Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16742-7. doi: 10.1073/pnas.1405016111. Epub 2014 Nov 10. Proc Natl Acad Sci U S A. 2014. PMID: 25385626 Free PMC article.
Contributions of Sequence to the Higher-Order Structures of DNA.
Todolli S, Perez PJ, Clauvelin N, Olson WK. Todolli S, et al. Among authors: olson wk. Biophys J. 2017 Feb 7;112(3):416-426. doi: 10.1016/j.bpj.2016.11.017. Epub 2016 Dec 9. Biophys J. 2017. PMID: 27955889 Free PMC article. Review.
DNA sequence-directed organization of chromatin: structure-based computational analysis of nucleosome-binding sequences.
Balasubramanian S, Xu F, Olson WK. Balasubramanian S, et al. Among authors: olson wk. Biophys J. 2009 Mar 18;96(6):2245-60. doi: 10.1016/j.bpj.2008.11.040. Biophys J. 2009. PMID: 19289051 Free PMC article.
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