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The EcoCyc Database.
Karp PD, Ong WK, Paley S, Billington R, Caspi R, Fulcher C, Kothari A, Krummenacker M, Latendresse M, Midford PE, Subhraveti P, Gama-Castro S, Muñiz-Rascado L, Bonavides-Martinez C, Santos-Zavaleta A, Mackie A, Collado-Vides J, Keseler IM, Paulsen I. Karp PD, et al. Among authors: ong wk. EcoSal Plus. 2018 Nov;8(1):10.1128/ecosalplus.ESP-0006-2018. doi: 10.1128/ecosalplus.ESP-0006-2018. EcoSal Plus. 2018. PMID: 30406744 Free PMC article. Review.
The MetaCyc database of metabolic pathways and enzymes.
Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD. Caspi R, et al. Among authors: ong q, ong wk. Nucleic Acids Res. 2018 Jan 4;46(D1):D633-D639. doi: 10.1093/nar/gkx935. Nucleic Acids Res. 2018. PMID: 29059334 Free PMC article.
The BioCyc collection of microbial genomes and metabolic pathways.
Karp PD, Billington R, Caspi R, Fulcher CA, Latendresse M, Kothari A, Keseler IM, Krummenacker M, Midford PE, Ong Q, Ong WK, Paley SM, Subhraveti P. Karp PD, et al. Among authors: ong q, ong wk. Brief Bioinform. 2019 Jul 19;20(4):1085-1093. doi: 10.1093/bib/bbx085. Brief Bioinform. 2019. PMID: 29447345 Free PMC article.
The MetaCyc database of metabolic pathways and enzymes - a 2019 update.
Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD. Caspi R, et al. Among authors: ong wk. Nucleic Acids Res. 2020 Jan 8;48(D1):D445-D453. doi: 10.1093/nar/gkz862. Nucleic Acids Res. 2020. PMID: 31586394 Free PMC article.
The EcoCyc Database in 2021.
Keseler IM, Gama-Castro S, Mackie A, Billington R, Bonavides-Martínez C, Caspi R, Kothari A, Krummenacker M, Midford PE, Muñiz-Rascado L, Ong WK, Paley S, Santos-Zavaleta A, Subhraveti P, Tierrafría VH, Wolfe AJ, Collado-Vides J, Paulsen IT, Karp PD. Keseler IM, et al. Among authors: ong wk. Front Microbiol. 2021 Jul 28;12:711077. doi: 10.3389/fmicb.2021.711077. eCollection 2021. Front Microbiol. 2021. PMID: 34394059 Free PMC article.
Metabolic Modeling with MetaFlux.
Latendresse M, Ong WK, Karp PD. Latendresse M, et al. Among authors: ong wk. Methods Mol Biol. 2022;2349:259-289. doi: 10.1007/978-1-0716-1585-0_12. Methods Mol Biol. 2022. PMID: 34718999
A Comparison of Microbial Genome Web Portals.
Karp PD, Ivanova N, Krummenacker M, Kyrpides N, Latendresse M, Midford P, Ong WK, Paley S, Seshadri R. Karp PD, et al. Among authors: ong wk. Front Microbiol. 2019 Feb 22;10:208. doi: 10.3389/fmicb.2019.00208. eCollection 2019. Front Microbiol. 2019. PMID: 30853946 Free PMC article. Review.
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