Ono Y - Search Results

1

PBSIM: PacBio reads simulator--toward accurate genome assembly.

Ono Y, Asai K, Hamada M. Ono Y, et al. Bioinformatics. 2013 Jan 1;29(1):119-21. doi: 10.1093/bioinformatics/bts649. Epub 2012 Nov 4. Bioinformatics. 2013. PMID: 23129296

2

Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat.

Kin T, Ono Y. Kin T, et al. Among authors: ono y. Bioinformatics. 2007 Nov 1;23(21):2945-6. doi: 10.1093/bioinformatics/btm455. Epub 2007 Sep 24. Bioinformatics. 2007. PMID: 17893084

3

Learning chromatin states with factorized information criteria.

Hamada M, Ono Y, Fujimaki R, Asai K. Hamada M, et al. Among authors: ono y. Bioinformatics. 2015 Aug 1;31(15):2426-33. doi: 10.1093/bioinformatics/btv163. Epub 2015 Mar 24. Bioinformatics. 2015. PMID: 25810430

4

Training alignment parameters for arbitrary sequencers with LAST-TRAIN.

Hamada M, Ono Y, Asai K, Frith MC. Hamada M, et al. Among authors: ono y. Bioinformatics. 2017 Mar 15;33(6):926-928. doi: 10.1093/bioinformatics/btw742. Bioinformatics. 2017. PMID: 28039163 Free PMC article.

5

Rtools: a web server for various secondary structural analyses on single RNA sequences.

Hamada M, Ono Y, Kiryu H, Sato K, Kato Y, Fukunaga T, Mori R, Asai K. Hamada M, et al. Among authors: ono y. Nucleic Acids Res. 2016 Jul 8;44(W1):W302-7. doi: 10.1093/nar/gkw337. Epub 2016 Apr 29. Nucleic Acids Res. 2016. PMID: 27131356 Free PMC article.

6

Computational overview of GPCR gene universe to support reverse chemical genomics study.

Suwa M, Ono Y. Suwa M, et al. Among authors: ono y. Methods Mol Biol. 2009;577:41-54. doi: 10.1007/978-1-60761-232-2_4. Methods Mol Biol. 2009. PMID: 19718507

7

The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs.

Mituyama T, Yamada K, Hattori E, Okida H, Ono Y, Terai G, Yoshizawa A, Komori T, Asai K. Mituyama T, et al. Among authors: ono y. Nucleic Acids Res. 2009 Jan;37(Database issue):D89-92. doi: 10.1093/nar/gkn805. Epub 2008 Oct 23. Nucleic Acids Res. 2009. PMID: 18948287 Free PMC article.

8

fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences.

Kin T, Yamada K, Terai G, Okida H, Yoshinari Y, Ono Y, Kojima A, Kimura Y, Komori T, Asai K. Kin T, et al. Among authors: ono y. Nucleic Acids Res. 2007 Jan;35(Database issue):D145-8. doi: 10.1093/nar/gkl837. Epub 2006 Nov 11. Nucleic Acids Res. 2007. PMID: 17099231 Free PMC article.

9

A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila.

Saito K, Inagaki S, Mituyama T, Kawamura Y, Ono Y, Sakota E, Kotani H, Asai K, Siomi H, Siomi MC. Saito K, et al. Among authors: ono y. Nature. 2009 Oct 29;461(7268):1296-9. doi: 10.1038/nature08501. Epub 2009 Oct 7. Nature. 2009. PMID: 19812547

10

LncRRIsearch: A Web Server for lncRNA-RNA Interaction Prediction Integrated With Tissue-Specific Expression and Subcellular Localization Data.

Fukunaga T, Iwakiri J, Ono Y, Hamada M. Fukunaga T, et al. Among authors: ono y. Front Genet. 2019 May 28;10:462. doi: 10.3389/fgene.2019.00462. eCollection 2019. Front Genet. 2019. PMID: 31191601 Free PMC article.

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