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Gene3D: Extensive prediction of globular domains in proteins.
Lewis TE, Sillitoe I, Dawson N, Lam SD, Clarke T, Lee D, Orengo C, Lees J. Lewis TE, et al. Among authors: orengo c. Nucleic Acids Res. 2018 Jan 4;46(D1):D1282. doi: 10.1093/nar/gkx1187. Nucleic Acids Res. 2018. PMID: 29194501 Free PMC article. No abstract available.
A structural perspective on genome evolution.
Lee D, Grant A, Buchan D, Orengo C. Lee D, et al. Among authors: orengo c. Curr Opin Struct Biol. 2003 Jun;13(3):359-69. doi: 10.1016/s0959-440x(03)00079-4. Curr Opin Struct Biol. 2003. PMID: 12831888 Review.
Trimethylaminuria and a human FMO3 mutation database.
Hernandez D, Addou S, Lee D, Orengo C, Shephard EA, Phillips IR. Hernandez D, et al. Among authors: orengo c. Hum Mutat. 2003 Sep;22(3):209-13. doi: 10.1002/humu.10252. Hum Mutat. 2003. PMID: 12938085 Review.
Recognizing the fold of a protein structure.
Harrison A, Pearl F, Sillitoe I, Slidel T, Mott R, Thornton J, Orengo C. Harrison A, et al. Among authors: orengo c. Bioinformatics. 2003 Sep 22;19(14):1748-59. doi: 10.1093/bioinformatics/btg240. Bioinformatics. 2003. PMID: 14512345
Progress towards mapping the universe of protein folds.
Grant A, Lee D, Orengo C. Grant A, et al. Among authors: orengo c. Genome Biol. 2004;5(5):107. doi: 10.1186/gb-2004-5-5-107. Epub 2004 Apr 29. Genome Biol. 2004. PMID: 15128436 Free PMC article.
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C. Pearl F, et al. Among authors: orengo c. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D247-51. doi: 10.1093/nar/gki024. Nucleic Acids Res. 2005. PMID: 15608188 Free PMC article.
Assessing strategies for improved superfamily recognition.
Sillitoe I, Dibley M, Bray J, Addou S, Orengo C. Sillitoe I, et al. Among authors: orengo c. Protein Sci. 2005 Jul;14(7):1800-10. doi: 10.1110/ps.041056105. Epub 2005 Jun 3. Protein Sci. 2005. PMID: 15937274 Free PMC article.
Gene3D: comprehensive structural and functional annotation of genomes.
Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C. Yeats C, et al. Among authors: orengo c. Nucleic Acids Res. 2008 Jan;36(Database issue):D414-8. doi: 10.1093/nar/gkm1019. Epub 2007 Nov 21. Nucleic Acids Res. 2008. PMID: 18032434 Free PMC article.
299 results