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Mitochondrial phylogenomics of modern and ancient equids.
Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, Nielsen SC, Weinstock J, Froese D, Vasiliev SK, Ovodov ND, Clary J, Helgen KM, Fleischer RC, Cooper A, Shapiro B, Orlando L. Vilstrup JT, et al. Among authors: Orlando L. PLoS One. 2013;8(2):e55950. doi: 10.1371/journal.pone.0055950. Epub 2013 Feb 20. PLoS One. 2013. PMID: 23437078 Free PMC article.
Revising the recent evolutionary history of equids using ancient DNA.
Orlando L, Metcalf JL, Alberdi MT, Telles-Antunes M, Bonjean D, Otte M, Martin F, Eisenmann V, Mashkour M, Morello F, Prado JL, Salas-Gismondi R, Shockey BJ, Wrinn PJ, Vasil'ev SK, Ovodov ND, Cherry MI, Hopwood B, Male D, Austin JJ, Hänni C, Cooper A. Orlando L, et al. Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21754-9. doi: 10.1073/pnas.0903672106. Epub 2009 Dec 9. Proc Natl Acad Sci U S A. 2009. PMID: 20007379 Free PMC article.
Ancient human genome sequence of an extinct Palaeo-Eskimo.
Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, Kivisild T, Gupta R, Bertalan M, Nielsen K, Gilbert MT, Wang Y, Raghavan M, Campos PF, Kamp HM, Wilson AS, Gledhill A, Tridico S, Bunce M, Lorenzen ED, Binladen J, Guo X, Zhao J, Zhang X, Zhang H, Li Z, Chen M, Orlando L, Kristiansen K, Bak M, Tommerup N, Bendixen C, Pierre TL, Grønnow B, Meldgaard M, Andreasen C, Fedorova SA, Osipova LP, Higham TF, Ramsey CB, Hansen TV, Nielsen FC, Crawford MH, Brunak S, Sicheritz-Pontén T, Villems R, Nielsen R, Krogh A, Wang J, Willerslev E. Rasmussen M, et al. Among authors: Orlando L. Nature. 2010 Feb 11;463(7282):757-62. doi: 10.1038/nature08835. Nature. 2010. PMID: 20148029 Free PMC article.
Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics.
Campos PF, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood AD, Kahlke RD, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, Shepherd K, Suchard MA, Zazula GD, Shapiro B, Gilbert MT. Campos PF, et al. Among authors: Orlando L. Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5675-80. doi: 10.1073/pnas.0907189107. Epub 2010 Mar 8. Proc Natl Acad Sci U S A. 2010. PMID: 20212118 Free PMC article.
The microcephalin ancestral allele in a Neanderthal individual.
Lari M, Rizzi E, Milani L, Corti G, Balsamo C, Vai S, Catalano G, Pilli E, Longo L, Condemi S, Giunti P, Hänni C, De Bellis G, Orlando L, Barbujani G, Caramelli D. Lari M, et al. Among authors: Orlando L. PLoS One. 2010 May 14;5(5):e10648. doi: 10.1371/journal.pone.0010648. PLoS One. 2010. PMID: 20498832 Free PMC article.
Ancient DNA sequences point to a large loss of mitochondrial genetic diversity in the saiga antelope (Saiga tatarica) since the Pleistocene.
Campos PF, Kristensen T, Orlando L, Sher A, Kholodova MV, Götherström A, Hofreiter M, Drucker DG, Kosintsev P, Tikhonov A, Baryshnikov GF, Willerslev E, Gilbert MT. Campos PF, et al. Among authors: Orlando L. Mol Ecol. 2010 Nov;19(22):4863-75. doi: 10.1111/j.1365-294X.2010.04826.x. Epub 2010 Sep 27. Mol Ecol. 2010. PMID: 20874761
Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae.
Vilstrup JT, Ho SY, Foote AD, Morin PA, Kreb D, Krützen M, Parra GJ, Robertson KM, de Stephanis R, Verborgh P, Willerslev E, Orlando L, Gilbert MT. Vilstrup JT, et al. Among authors: Orlando L. BMC Evol Biol. 2011 Mar 10;11:65. doi: 10.1186/1471-2148-11-65. BMC Evol Biol. 2011. PMID: 21392378 Free PMC article.
The additional testing of alternative topologies allowed us to reject all other putative relationships, with the exception that we were unable to reject the hypothesis that the relationship between L. albirostris and the Globicephalinae and Delphininae subfamilies was polytomic. ...
The additional testing of alternative topologies allowed us to reject all other putative relationships, with the exception that we were unab …
mapDamage: testing for damage patterns in ancient DNA sequences.
Ginolhac A, Rasmussen M, Gilbert MT, Willerslev E, Orlando L. Ginolhac A, et al. Among authors: Orlando L. Bioinformatics. 2011 Aug 1;27(15):2153-5. doi: 10.1093/bioinformatics/btr347. Epub 2011 Jun 9. Bioinformatics. 2011. PMID: 21659319
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