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Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.
Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, Chain PS, Chertkov O, Chokoshvili O, Coyne S, Davenport K, Detter JC, Dorman W, Erkkila TH, Folster JP, Frey KG, George M, Gleasner C, Henry M, Hill KK, Hubbard K, Insalaco J, Johnson S, Kitzmiller A, Krepps M, Lo CC, Luu T, McNew LA, Minogue T, Munk CA, Osborne B, Patel M, Reitenga KG, Rosenzweig CN, Shea A, Shen X, Strockbine N, Tarr C, Teshima H, van Gieson E, Verratti K, Wolcott M, Xie G, Sozhamannan S, Gibbons HS; Threat Characterization Consortium. Ahmed SA, et al. Among authors: osborne b. PLoS One. 2012;7(11):e48228. doi: 10.1371/journal.pone.0048228. Epub 2012 Nov 1. PLoS One. 2012. PMID: 23133618 Free PMC article.
DIYA: a bacterial annotation pipeline for any genomics lab.
Stewart AC, Osborne B, Read TD. Stewart AC, et al. Among authors: osborne b. Bioinformatics. 2009 Apr 1;25(7):962-3. doi: 10.1093/bioinformatics/btp097. Epub 2009 Mar 2. Bioinformatics. 2009. PMID: 19254921 Free PMC article.
Gene functional similarity search tool (GFSST).
Zhang P, Zhang J, Sheng H, Russo JJ, Osborne B, Buetow K. Zhang P, et al. Among authors: osborne b. BMC Bioinformatics. 2006 Mar 14;7:135. doi: 10.1186/1471-2105-7-135. BMC Bioinformatics. 2006. PMID: 16536867 Free PMC article.
The Bioperl toolkit: Perl modules for the life sciences.
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H, Lehväslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, Senger M, Stein LD, Stupka E, Wilkinson MD, Birney E. Stajich JE, et al. Genome Res. 2002 Oct;12(10):1611-8. doi: 10.1101/gr.361602. Genome Res. 2002. PMID: 12368254 Free PMC article.
Pharmacological interventions in human aging.
Petr MA, Matiyevskaya F, Osborne B, Berglind M, Reves S, Zhang B, Ezra MB, Carmona-Marin LM, Syadzha MF, Mediavilla MC, Keijzers G, Bakula D, Mkrtchyan GV, Scheibye-Knudsen M. Petr MA, et al. Among authors: osborne b. Ageing Res Rev. 2024 Mar;95:102213. doi: 10.1016/j.arr.2024.102213. Epub 2024 Feb 2. Ageing Res Rev. 2024. PMID: 38309591 Review.
Extreme drought impacts have been underestimated in grasslands and shrublands globally.
Smith MD, Wilkins KD, Holdrege MC, Wilfahrt P, Collins SL, Knapp AK, Sala OE, Dukes JS, Phillips RP, Yahdjian L, Gherardi LA, Ohlert T, Beier C, Fraser LH, Jentsch A, Loik ME, Maestre FT, Power SA, Yu Q, Felton AJ, Munson SM, Luo Y, Abdoli H, Abedi M, Alados CL, Alberti J, Alon M, An H, Anacker B, Anderson M, Auge H, Bachle S, Bahalkeh K, Bahn M, Batbaatar A, Bauerle T, Beard KH, Behn K, Beil I, Biancari L, Blindow I, Bondaruk VF, Borer ET, Bork EW, Bruschetti CM, Byrne KM, Cahill JF Jr, Calvo DA, Carbognani M, Cardoni A, Carlyle CN, Castillo-Garcia M, Chang SX, Chieppa J, Cianciaruso MV, Cohen O, Cordeiro AL, Cusack DF, Dahlke S, Daleo P, D'Antonio CM, Dietterich LH, S Doherty T, Dubbert M, Ebeling A, Eisenhauer N, Fischer FM, Forte TGW, Gebauer T, Gozalo B, Greenville AC, Guidoni-Martins KG, Hannusch HJ, Vatsø Haugum S, Hautier Y, Hefting M, Henry HAL, Hoss D, Ingrisch J, Iribarne O, Isbell F, Johnson Y, Jordan S, Kelly EF, Kimmel K, Kreyling J, Kröel-Dulay G, Kröpfl A, Kübert A, Kulmatiski A, Lamb EG, Larsen KS, Larson J, Lawson J, Leder CV, Linstädter A, Liu J, Liu S, Lodge AG, Longo G, Loydi A, Luan J, Curtis Lubbe F, Macfarlane C, Mackie-Haas K, Malyshev AV, Maturano-Ruiz A,… See abstract for full author list ➔ Smith MD, et al. Among authors: osborne b. Proc Natl Acad Sci U S A. 2024 Jan 23;121(4):e2309881120. doi: 10.1073/pnas.2309881120. Epub 2024 Jan 8. Proc Natl Acad Sci U S A. 2024. PMID: 38190514 Free PMC article.
481 results