Oshima T - Search Results

1

Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.

Chumsakul O, Takahashi H, Oshima T, Hishimoto T, Kanaya S, Ogasawara N, Ishikawa S. Chumsakul O, et al. Among authors: oshima t. Nucleic Acids Res. 2011 Jan;39(2):414-28. doi: 10.1093/nar/gkq780. Epub 2010 Sep 3. Nucleic Acids Res. 2011. PMID: 20817675 Free PMC article.

2

Distribution of repetitive sequences on the leading and lagging strands of the Escherichia coli genome: comparative study of Long Direct Repeat (LDR) sequences.

Kawano M, Kanaya S, Oshima T, Masuda Y, Ara T, Mori H. Kawano M, et al. Among authors: oshima t. DNA Res. 2002 Feb 28;9(1):1-10. doi: 10.1093/dnares/9.1.1. DNA Res. 2002. PMID: 11939563 Free article.

3

Conservation of translation initiation sites based on dinucleotide frequency and codon usage in Escherichia coli K-12 (W3110): non-random distribution of A/T-rich sequences immediately upstream of the translation initiation codon.

Yamagishi K, Oshima T, Masuda Y, Ara T, Kanaya S, Mori H. Yamagishi K, et al. Among authors: oshima t. DNA Res. 2002 Feb 28;9(1):19-24. doi: 10.1093/dnares/9.1.19. DNA Res. 2002. PMID: 11939565 Free article.

4

Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12.

Oshima T, Aiba H, Masuda Y, Kanaya S, Sugiura M, Wanner BL, Mori H, Mizuno T. Oshima T, et al. Mol Microbiol. 2002 Oct;46(1):281-91. doi: 10.1046/j.1365-2958.2002.03170.x. Mol Microbiol. 2002. PMID: 12366850 Free article.

5

Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis.

Fukushima A, Ikemura T, Kinouchi M, Oshima T, Kudo Y, Mori H, Kanaya S. Fukushima A, et al. Among authors: oshima t. Gene. 2002 Oct 30;300(1-2):203-11. doi: 10.1016/s0378-1119(02)00850-8. Gene. 2002. PMID: 12468102

6

Detection of periodicity in eukaryotic genomes on the basis of power spectrum analysis.

Fukushima A, Ikemura T, Oshima T, Mori H, Kanaya S. Fukushima A, et al. Among authors: oshima t. Genome Inform. 2002;13:21-9. Genome Inform. 2002. PMID: 14571371

7

The GTP-binding protein YlqF participates in the late step of 50 S ribosomal subunit assembly in Bacillus subtilis.

Matsuo Y, Morimoto T, Kuwano M, Loh PC, Oshima T, Ogasawara N. Matsuo Y, et al. Among authors: oshima t. J Biol Chem. 2006 Mar 24;281(12):8110-7. doi: 10.1074/jbc.M512556200. Epub 2006 Jan 23. J Biol Chem. 2006. PMID: 16431913 Free article.

8

Large-scale identification of protein-protein interaction of Escherichia coli K-12.

Arifuzzaman M, Maeda M, Itoh A, Nishikata K, Takita C, Saito R, Ara T, Nakahigashi K, Huang HC, Hirai A, Tsuzuki K, Nakamura S, Altaf-Ul-Amin M, Oshima T, Baba T, Yamamoto N, Kawamura T, Ioka-Nakamichi T, Kitagawa M, Tomita M, Kanaya S, Wada C, Mori H. Arifuzzaman M, et al. Among authors: oshima t. Genome Res. 2006 May;16(5):686-91. doi: 10.1101/gr.4527806. Epub 2006 Apr 10. Genome Res. 2006. PMID: 16606699 Free PMC article.

9

Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase.

Oshima T, Ishikawa S, Kurokawa K, Aiba H, Ogasawara N. Oshima T, et al. DNA Res. 2006 Aug 31;13(4):141-53. doi: 10.1093/dnares/dsl009. Epub 2006 Oct 17. DNA Res. 2006. PMID: 17046956 Free article.

10

Identification and characterization of a second, inducible promoter of relA in Escherichia coli.

Nakagawa A, Oshima T, Mori H. Nakagawa A, et al. Among authors: oshima t. Genes Genet Syst. 2006 Oct;81(5):299-310. doi: 10.1266/ggs.81.299. Genes Genet Syst. 2006. PMID: 17159291 Free article.

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