Oshlack A - Search Results

1

Gene ontology analysis for RNA-seq: accounting for selection bias.

Young MD, Wakefield MJ, Smyth GK, Oshlack A. Young MD, et al. Among authors: oshlack a. Genome Biol. 2010;11(2):R14. doi: 10.1186/gb-2010-11-2-r14. Epub 2010 Feb 4. Genome Biol. 2010. PMID: 20132535 Free PMC article.

2

The role of cardiac transcription factor NKX2-5 in regulating the human cardiac miRNAome.

Arasaratnam D, Bell KM, Sim CB, Koutsis K, Anderson DJ, Qian EL, Stanley EG, Elefanty AG, Cheung MM, Oshlack A, White AJ, Abi Khalil C, Hudson JE, Porrello ER, Elliott DA. Arasaratnam D, et al. Among authors: oshlack a. Sci Rep. 2019 Nov 4;9(1):15928. doi: 10.1038/s41598-019-52280-9. Sci Rep. 2019. PMID: 31685864 Free PMC article.

3

Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis.

Holloway AJ, Oshlack A, Diyagama DS, Bowtell DD, Smyth GK. Holloway AJ, et al. Among authors: oshlack a. BMC Bioinformatics. 2006 Nov 22;7:511. doi: 10.1186/1471-2105-7-511. BMC Bioinformatics. 2006. PMID: 17118209 Free PMC article.

4

Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes.

Oshlack A, Emslie D, Corcoran LM, Smyth GK. Oshlack A, et al. Genome Biol. 2007;8(1):R2. doi: 10.1186/gb-2007-8-1-r2. Genome Biol. 2007. PMID: 17204140 Free PMC article.

5

Using DNA microarrays to study gene expression in closely related species.

Oshlack A, Chabot AE, Smyth GK, Gilad Y. Oshlack A, et al. Bioinformatics. 2007 May 15;23(10):1235-42. doi: 10.1093/bioinformatics/btm111. Epub 2007 Mar 23. Bioinformatics. 2007. PMID: 17384014

6

Segmental duplications contribute to gene expression differences between humans and chimpanzees.

Blekhman R, Oshlack A, Gilad Y. Blekhman R, et al. Among authors: oshlack a. Genetics. 2009 Jun;182(2):627-30. doi: 10.1534/genetics.108.099960. Epub 2009 Mar 30. Genetics. 2009. PMID: 19332884 Free PMC article.

7

Transcript length bias in RNA-seq data confounds systems biology.

Oshlack A, Wakefield MJ. Oshlack A, et al. Biol Direct. 2009 Apr 16;4:14. doi: 10.1186/1745-6150-4-14. Biol Direct. 2009. PMID: 19371405 Free PMC article.

8

A scaling normalization method for differential expression analysis of RNA-seq data.

Robinson MD, Oshlack A. Robinson MD, et al. Among authors: oshlack a. Genome Biol. 2010;11(3):R25. doi: 10.1186/gb-2010-11-3-r25. Epub 2010 Mar 2. Genome Biol. 2010. PMID: 20196867 Free PMC article.

9

Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips.

Shi W, Oshlack A, Smyth GK. Shi W, et al. Among authors: oshlack a. Nucleic Acids Res. 2010 Dec;38(22):e204. doi: 10.1093/nar/gkq871. Epub 2010 Oct 6. Nucleic Acids Res. 2010. PMID: 20929874 Free PMC article.

10

From RNA-seq reads to differential expression results.

Oshlack A, Robinson MD, Young MD. Oshlack A, et al. Genome Biol. 2010;11(12):220. doi: 10.1186/gb-2010-11-12-220. Epub 2010 Dec 22. Genome Biol. 2010. PMID: 21176179 Free PMC article. Review.

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