Ovcharenko I - Search Results

1

Interpreting mammalian evolution using Fugu genome comparisons.

Ovcharenko I, Stubbs L, Loots GG. Ovcharenko I, et al. Genomics. 2004 Nov;84(5):890-5. doi: 10.1016/j.ygeno.2004.07.011. Genomics. 2004. PMID: 15475268

2

Dichotomy in redundant enhancers points to presence of initiators of gene regulation.

Song W, Ovcharenko I. Song W, et al. Among authors: ovcharenko i. BMC Genomics. 2018 Dec 18;19(1):947. doi: 10.1186/s12864-018-5335-0. BMC Genomics. 2018. PMID: 30563465 Free PMC article.

3

Epigenetic and genetic alterations and their influence on gene regulation in chronic lymphocytic leukemia.

Huang D, Ovcharenko I. Huang D, et al. Among authors: ovcharenko i. BMC Genomics. 2017 Mar 16;18(1):236. doi: 10.1186/s12864-017-3617-6. BMC Genomics. 2017. PMID: 28302063 Free PMC article.

4

Genome-wide discovery of human heart enhancers.

Narlikar L, Sakabe NJ, Blanski AA, Arimura FE, Westlund JM, Nobrega MA, Ovcharenko I. Narlikar L, et al. Among authors: ovcharenko i. Genome Res. 2010 Mar;20(3):381-92. doi: 10.1101/gr.098657.109. Epub 2010 Jan 14. Genome Res. 2010. PMID: 20075146 Free PMC article.

5

Identifying regulatory elements in eukaryotic genomes.

Narlikar L, Ovcharenko I. Narlikar L, et al. Among authors: ovcharenko i. Brief Funct Genomic Proteomic. 2009 Jul;8(4):215-30. doi: 10.1093/bfgp/elp014. Epub 2009 Jun 4. Brief Funct Genomic Proteomic. 2009. PMID: 19498043 Free PMC article. Review.

6

The genome of the Western clawed frog Xenopus tropicalis.

Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS. Hellsten U, et al. Among authors: ovcharenko i. Science. 2010 Apr 30;328(5978):633-6. doi: 10.1126/science.1183670. Science. 2010. PMID: 20431018 Free PMC article.

7

Evolution and functional classification of vertebrate gene deserts.

Ovcharenko I, Loots GG, Nobrega MA, Hardison RC, Miller W, Stubbs L. Ovcharenko I, et al. Genome Res. 2005 Jan;15(1):137-45. doi: 10.1101/gr.3015505. Epub 2004 Dec 8. Genome Res. 2005. PMID: 15590943 Free PMC article.

8

ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.

Loots G, Ovcharenko I. Loots G, et al. Among authors: ovcharenko i. Bioinformatics. 2007 Jan 1;23(1):122-4. doi: 10.1093/bioinformatics/btl546. Epub 2006 Nov 7. Bioinformatics. 2007. PMID: 17090579

9

Genome-wide identification of conserved regulatory function in diverged sequences.

Taher L, McGaughey DM, Maragh S, Aneas I, Bessling SL, Miller W, Nobrega MA, McCallion AS, Ovcharenko I. Taher L, et al. Among authors: ovcharenko i. Genome Res. 2011 Jul;21(7):1139-49. doi: 10.1101/gr.119016.110. Epub 2011 May 31. Genome Res. 2011. PMID: 21628450 Free PMC article.

10

Dcode.org anthology of comparative genomic tools.

Loots GG, Ovcharenko I. Loots GG, et al. Among authors: ovcharenko i. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W56-64. doi: 10.1093/nar/gki355. Nucleic Acids Res. 2005. PMID: 15980535 Free PMC article.

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