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2019 4
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2024 1

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An Automated Model Annotation System (AMAS) for SBML Models.
Shin W, Gennari JH, Hellerstein JL, Sauro HM. Shin W, et al. bioRxiv [Preprint]. 2023 Jul 21:2023.07.19.549722. doi: 10.1101/2023.07.19.549722. bioRxiv. 2023. PMID: 37503075 Free PMC article. Updated. Preprint.
Building the next generation of virtual cells to understand cellular biology.
Johnson GT, Agmon E, Akamatsu M, Lundberg E, Lyons B, Ouyang W, Quintero-Carmona OA, Riel-Mehan M, Rafelski S, Horwitz R. Johnson GT, et al. Biophys J. 2023 Sep 19;122(18):3560-3569. doi: 10.1016/j.bpj.2023.04.006. Epub 2023 Apr 11. Biophys J. 2023. PMID: 37050874 Free article. Review.
SBML to bond graphs: From conversion to composition.
Shahidi N, Pan M, Tran K, Crampin EJ, Nickerson DP. Shahidi N, et al. Math Biosci. 2022 Oct;352:108901. doi: 10.1016/j.mbs.2022.108901. Epub 2022 Sep 9. Math Biosci. 2022. PMID: 36096376 Free article.
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout GB, Faeder JR, Freiburger AP, Fröhlich F, Funahashi A, Garny A, Gennari JH, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein JL, Hermjakob H, Hoops S, Ison JC, Jahn D, Jakubowski HV, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff RSM, Mandal S, McDougal R, Medley JK, Mendes P, Müller R, Myers CJ, Naldi A, Nguyen TVN, Nickerson DP, Olivier BG, Patoliya D, Paulevé L, Petzold LR, Priya A, Rampadarath AK, Rohwer JM, Saglam AS, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas PJ, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg AP, Schaff JC, Blinov ML, Sauro HM, Moraru II, Karr JR. Shaikh B, et al. Nucleic Acids Res. 2022 Jul 5;50(W1):W108-W114. doi: 10.1093/nar/gkac331. Nucleic Acids Res. 2022. PMID: 35524558 Free PMC article.
24 results