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196 results
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Near-optimal probabilistic RNA-seq quantification.
Bray NL, Pimentel H, Melsted P, Pachter L. Bray NL, et al. Among authors: pachter l. Nat Biotechnol. 2016 May;34(5):525-7. doi: 10.1038/nbt.3519. Epub 2016 Apr 4. Nat Biotechnol. 2016. PMID: 27043002
Strategies and tools for whole-genome alignments.
Couronne O, Poliakov A, Bray N, Ishkhanov T, Ryaboy D, Rubin E, Pachter L, Dubchak I. Couronne O, et al. Among authors: pachter l. Genome Res. 2003 Jan;13(1):73-80. doi: 10.1101/gr.762503. Genome Res. 2003. PMID: 12529308 Free PMC article.
AVID: A global alignment program.
Bray N, Dubchak I, Pachter L. Bray N, et al. Among authors: pachter l. Genome Res. 2003 Jan;13(1):97-102. doi: 10.1101/gr.789803. Genome Res. 2003. PMID: 12529311 Free PMC article.
Parametric inference for biological sequence analysis.
Pachter L, Sturmfels B. Pachter L, et al. Proc Natl Acad Sci U S A. 2004 Nov 16;101(46):16138-43. doi: 10.1073/pnas.0406011101. Epub 2004 Nov 8. Proc Natl Acad Sci U S A. 2004. PMID: 15534223 Free PMC article.
Tropical geometry of statistical models.
Pachter L, Sturmfels B. Pachter L, et al. Proc Natl Acad Sci U S A. 2004 Nov 16;101(46):16132-7. doi: 10.1073/pnas.0406010101. Epub 2004 Nov 8. Proc Natl Acad Sci U S A. 2004. PMID: 15534224 Free PMC article.
Multiple alignment by sequence annealing.
Schwartz AS, Pachter L. Schwartz AS, et al. Among authors: pachter l. Bioinformatics. 2007 Jan 15;23(2):e24-9. doi: 10.1093/bioinformatics/btl311. Bioinformatics. 2007. PMID: 17237099
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