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A protocol for generating a high-quality genome-scale metabolic reconstruction.
Thiele I, Palsson BØ. Thiele I, et al. Among authors: palsson bo. Nat Protoc. 2010 Jan;5(1):93-121. doi: 10.1038/nprot.2009.203. Epub 2010 Jan 7. Nat Protoc. 2010. PMID: 20057383 Free PMC article.
Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis.
Price ND, Papin JA, Palsson BØ. Price ND, et al. Among authors: palsson bo. Genome Res. 2002 May;12(5):760-9. doi: 10.1101/gr.218002. Genome Res. 2002. PMID: 11997342 Free PMC article.
Transcriptional regulation in constraints-based metabolic models of Escherichia coli.
Covert MW, Palsson BØ. Covert MW, et al. Among authors: palsson bo. J Biol Chem. 2002 Aug 2;277(31):28058-64. doi: 10.1074/jbc.M201691200. Epub 2002 May 10. J Biol Chem. 2002. PMID: 12006566
In silico biology through "omics".
Palsson B. Palsson B. Nat Biotechnol. 2002 Jul;20(7):649-50. doi: 10.1038/nbt0702-649. Nat Biotechnol. 2002. PMID: 12089538 No abstract available.
Extreme pathway analysis of human red blood cell metabolism.
Wiback SJ, Palsson BO. Wiback SJ, et al. Among authors: palsson bo. Biophys J. 2002 Aug;83(2):808-18. doi: 10.1016/S0006-3495(02)75210-7. Biophys J. 2002. PMID: 12124266 Free PMC article.
Genome-scale metabolic model of Helicobacter pylori 26695.
Schilling CH, Covert MW, Famili I, Church GM, Edwards JS, Palsson BO. Schilling CH, et al. Among authors: palsson bo. J Bacteriol. 2002 Aug;184(16):4582-93. doi: 10.1128/jb.184.16.4582-4593.2002. J Bacteriol. 2002. PMID: 12142428 Free PMC article.
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth.
Ibarra RU, Edwards JS, Palsson BO. Ibarra RU, et al. Among authors: palsson bo. Nature. 2002 Nov 14;420(6912):186-9. doi: 10.1038/nature01149. Nature. 2002. PMID: 12432395
Sequence-based analysis of metabolic demands for protein synthesis in prokaryotes.
Allen TE, Palsson BØ. Allen TE, et al. Among authors: palsson bo. J Theor Biol. 2003 Jan 7;220(1):1-18. doi: 10.1006/jtbi.2003.3087. J Theor Biol. 2003. PMID: 12453446
Extreme pathway lengths and reaction participation in genome-scale metabolic networks.
Papin JA, Price ND, Palsson BØ. Papin JA, et al. Among authors: palsson bo. Genome Res. 2002 Dec;12(12):1889-900. doi: 10.1101/gr.327702. Genome Res. 2002. PMID: 12466293 Free PMC article.
Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices.
Price ND, Reed JL, Papin JA, Famili I, Palsson BO. Price ND, et al. Among authors: palsson bo. Biophys J. 2003 Feb;84(2 Pt 1):794-804. doi: 10.1016/S0006-3495(03)74899-1. Biophys J. 2003. PMID: 12547764 Free PMC article.
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