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miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes.
Dweep H, Sticht C, Pandey P, Gretz N. Dweep H, et al. Among authors: pandey p. J Biomed Inform. 2011 Oct;44(5):839-47. doi: 10.1016/j.jbi.2011.05.002. Epub 2011 May 14. J Biomed Inform. 2011. PMID: 21605702
A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction.
Srivastava PK, Moturu TR, Pandey P, Baldwin IT, Pandey SP. Srivastava PK, et al. Among authors: pandey p, pandey sp. BMC Genomics. 2014 May 8;15(1):348. doi: 10.1186/1471-2164-15-348. BMC Genomics. 2014. PMID: 24885295 Free PMC article.
Inhibition of Comt with tolcapone slows progression of polycystic kidney disease in the more severely affected PKD/Mhm (cy/+) substrain of the Hannover Sprague-Dawley rat.
Boehn SN, Spahn S, Neudecker S, Keppler A, Bihoreau MT, Kränzlin B, Pandey P, Hoffmann SC, Li L, Torres VE, Gröne HJ, Gretz N. Boehn SN, et al. Among authors: pandey p. Nephrol Dial Transplant. 2013 Aug;28(8):2045-58. doi: 10.1093/ndt/gft014. Epub 2013 Mar 29. Nephrol Dial Transplant. 2013. PMID: 23543593 Free PMC article.
Microarray-based approach identifies microRNAs and their target functional patterns in polycystic kidney disease.
Pandey P, Brors B, Srivastava PK, Bott A, Boehn SN, Groene HJ, Gretz N. Pandey P, et al. BMC Genomics. 2008 Dec 23;9:624. doi: 10.1186/1471-2164-9-624. BMC Genomics. 2008. PMID: 19102782 Free PMC article.
Prediction of Plant miRNA Targets.
Pandey P, Srivastava PK, Pandey SP. Pandey P, et al. Among authors: pandey sp. Methods Mol Biol. 2019;1932:99-107. doi: 10.1007/978-1-4939-9042-9_7. Methods Mol Biol. 2019. PMID: 30701494
Parallel analysis of mRNA and microRNA microarray profiles to explore functional regulatory patterns in polycystic kidney disease: using PKD/Mhm rat model.
Dweep H, Sticht C, Kharkar A, Pandey P, Gretz N. Dweep H, et al. Among authors: pandey p. PLoS One. 2013;8(1):e53780. doi: 10.1371/journal.pone.0053780. Epub 2013 Jan 10. PLoS One. 2013. PMID: 23326503 Free PMC article.
Argonaute 8 (AGO8) Mediates the Elicitation of Direct Defenses against Herbivory.
Pradhan M, Pandey P, Gase K, Sharaff M, Singh RK, Sethi A, Baldwin IT, Pandey SP. Pradhan M, et al. Among authors: pandey p, pandey sp. Plant Physiol. 2017 Oct;175(2):927-946. doi: 10.1104/pp.17.00702. Epub 2017 Aug 15. Plant Physiol. 2017. PMID: 28811334 Free PMC article.
Wild tobacco genomes reveal the evolution of nicotine biosynthesis.
Xu S, Brockmöller T, Navarro-Quezada A, Kuhl H, Gase K, Ling Z, Zhou W, Kreitzer C, Stanke M, Tang H, Lyons E, Pandey P, Pandey SP, Timmermann B, Gaquerel E, Baldwin IT. Xu S, et al. Among authors: pandey p, pandey sp. Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):6133-6138. doi: 10.1073/pnas.1700073114. Epub 2017 May 23. Proc Natl Acad Sci U S A. 2017. PMID: 28536194 Free PMC article.
Correlation of altered expression of a long non-coding RNA, NEAT1, in peripheral blood mononuclear cells with dengue disease progression.
Pandey AD, Goswami S, Shukla S, Das S, Ghosal S, Pal M, Bandyopadhyay B, Ramachandran V, Basu N, Sood V, Pandey P, Chakrabarti J, Vrati S, Banerjee A. Pandey AD, et al. Among authors: pandey p. J Infect. 2017 Dec;75(6):541-554. doi: 10.1016/j.jinf.2017.09.016. Epub 2017 Oct 12. J Infect. 2017. PMID: 29031635
We identified Nuclear Enriched Abundant Transcript 1 (NEAT1) as one of the differentially expressed lncRNAs (adjusted P ≤ 0.05 and log-fold change ≥ 2) and subsequently validated the expression by qRT-PCR. ...
We identified Nuclear Enriched Abundant Transcript 1 (NEAT1) as one of the differentially expressed lncRNAs (adjusted P ≤ 0.05 and lo …
Systems biology approach to identify transcriptome reprogramming and candidate microRNA targets during the progression of polycystic kidney disease.
Pandey P, Qin S, Ho J, Zhou J, Kreidberg JA. Pandey P, et al. BMC Syst Biol. 2011 Apr 25;5:56. doi: 10.1186/1752-0509-5-56. BMC Syst Biol. 2011. PMID: 21518438 Free PMC article.
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