Cloning and biochemical characterization of a novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate)-hydrolyzing esterase from the newly isolated Nocardioides sp. strain SG-4G and its potential for use in enzymatic bioremediation

Appl Environ Microbiol. 2010 May;76(9):2940-5. doi: 10.1128/AEM.02990-09. Epub 2010 Mar 12.

Abstract

A highly efficient carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC)-mineralizing bacterium was isolated from enrichment cultures originating from MBC-contaminated soil samples. This bacterium, Nocardioides sp. strain SG-4G, hydrolyzed MBC to 2-aminobenzimidazole, which in turn was converted to the previously unknown metabolite 2-hydroxybenzimidazole. The initial steps of this novel metabolic pathway were confirmed by growth and enzyme assays and liquid chromatography-mass spectrometry (LC-MS) studies. The enzyme responsible for carrying out the first step was purified and subjected to N-terminal and internal peptide sequencing. The cognate gene, named mheI (for MBC-hydrolyzing enzyme), was cloned using a reverse genetics approach. The MheI enzyme was found to be a serine hydrolase of 242 amino acid residues. Its nearest known relative is an uncharacterized hypothetical protein with only 40% amino acid identity to it. Codon optimized mheI was heterologously expressed in Escherichia coli, and the His-tagged enzyme was purified and biochemically characterized. The enzyme has a K(m) and k(cat) of 6.1 muM and 170 min(-1), respectively, for MBC. Radiation-killed, freeze-dried SG-4G cells showed strong and stable MBC detoxification activity suitable for use in enzymatic bioremediation applications.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Benzimidazoles / metabolism*
  • Biodegradation, Environmental
  • Carbamates / metabolism*
  • Cloning, Molecular
  • Esterases / chemistry
  • Esterases / genetics
  • Esterases / metabolism*
  • Gram-Positive Bacteria / enzymology*
  • Gram-Positive Bacteria / isolation & purification
  • Hydrolysis
  • Molecular Sequence Data

Substances

  • Benzimidazoles
  • Carbamates
  • Esterases
  • carbendazim

Associated data

  • GENBANK/GQ451604
  • GENBANK/GQ454794
  • GENBANK/GQ454795