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28 results
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A gene expression map of Arabidopsis thaliana development.
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Schölkopf B, Weigel D, Lohmann JU. Schmid M, et al. Among authors: pape uj. Nat Genet. 2005 May;37(5):501-6. doi: 10.1038/ng1543. Epub 2005 Apr 3. Nat Genet. 2005. PMID: 15806101
Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes.
Toenjes M, Schueler M, Hammer S, Pape UJ, Fischer JJ, Berger F, Vingron M, Sperling S. Toenjes M, et al. Among authors: pape uj. Mol Biosyst. 2008 Jun;4(6):589-98. doi: 10.1039/b800207j. Epub 2008 Apr 2. Mol Biosyst. 2008. PMID: 18493657
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.
Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, Tahiliani M, Daley GQ, Liu XS, Ecker JR, Milos PM, Agarwal S, Rao A. Pastor WA, et al. Among authors: pape uj. Nature. 2011 May 19;473(7347):394-7. doi: 10.1038/nature10102. Epub 2011 May 8. Nature. 2011. PMID: 21552279 Free PMC article.
Statistical detection of cooperative transcription factors with similarity adjustment.
Pape UJ, Klein H, Vingron M. Pape UJ, et al. Bioinformatics. 2009 Aug 15;25(16):2103-9. doi: 10.1093/bioinformatics/btp143. Epub 2009 Mar 13. Bioinformatics. 2009. PMID: 19286833 Free PMC article.
Compound poisson approximation of the number of occurrences of a position frequency matrix (PFM) on both strands.
Pape UJ, Rahmann S, Sun F, Vingron M. Pape UJ, et al. J Comput Biol. 2008 Jul-Aug;15(6):547-64. doi: 10.1089/cmb.2007.0084. J Comput Biol. 2008. PMID: 18631020 Free PMC article.
A new statistical model to select target sequences bound by transcription factors.
Pape UJ, Grossmann S, Hammer S, Sperling S, Vingron M. Pape UJ, et al. Genome Inform. 2006;17(1):134-40. Genome Inform. 2006. PMID: 17503363
Natural similarity measures between position frequency matrices with an application to clustering.
Pape UJ, Rahmann S, Vingron M. Pape UJ, et al. Bioinformatics. 2008 Feb 1;24(3):350-7. doi: 10.1093/bioinformatics/btm610. Epub 2008 Jan 2. Bioinformatics. 2008. PMID: 18174183
Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells.
Huang Y, Chavez L, Chang X, Wang X, Pastor WA, Kang J, Zepeda-Martínez JA, Pape UJ, Jacobsen SE, Peters B, Rao A. Huang Y, et al. Among authors: pape uj. Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1361-6. doi: 10.1073/pnas.1322921111. Epub 2014 Jan 13. Proc Natl Acad Sci U S A. 2014. PMID: 24474761 Free PMC article.
Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2.
Ko M, Huang Y, Jankowska AM, Pape UJ, Tahiliani M, Bandukwala HS, An J, Lamperti ED, Koh KP, Ganetzky R, Liu XS, Aravind L, Agarwal S, Maciejewski JP, Rao A. Ko M, et al. Among authors: pape uj. Nature. 2010 Dec 9;468(7325):839-43. doi: 10.1038/nature09586. Nature. 2010. PMID: 21057493 Free PMC article.
Heterogeneous nuclear ribonucleoprotein L-like (hnRNPLL) and elongation factor, RNA polymerase II, 2 (ELL2) are regulators of mRNA processing in plasma cells.
Benson MJ, Aijö T, Chang X, Gagnon J, Pape UJ, Anantharaman V, Aravind L, Pursiheimo JP, Oberdoerffer S, Liu XS, Lahesmaa R, Lähdesmäki H, Rao A. Benson MJ, et al. Among authors: pape uj. Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16252-7. doi: 10.1073/pnas.1214414109. Epub 2012 Sep 18. Proc Natl Acad Sci U S A. 2012. PMID: 22991471 Free PMC article.
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